Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019858A_C01 KMC019858A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_729801.1| CG32105-PB [Drosophila melanogaster] gi|2309360... 35 0.41
ref|NP_038187.1| ribosomal protein S3 [Chrysodidymus synuroideus... 34 0.91
ref|NP_702134.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.6
gb|EAA22391.1| serine/threonine-protein kinase [Plasmodium yoeli... 33 2.0
ref|NP_705219.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.9
>ref|NP_729801.1| CG32105-PB [Drosophila melanogaster] gi|23093601|gb|AAF49930.2|
CG32105-PB [Drosophila melanogaster]
gi|28316896|gb|AAO39470.1| RE70810p [Drosophila
melanogaster]
Length = 640
Score = 35.4 bits (80), Expect = 0.41
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = +1
Query: 238 IPTNSIPTPTHYNPYILCLSEKKHYNPNNQNN 333
+P NS PTPT ++P S H N NN NN
Sbjct: 109 VPINSCPTPTGHSPLSSSSSNSNHNNNNNNNN 140
>ref|NP_038187.1| ribosomal protein S3 [Chrysodidymus synuroideus]
gi|7110481|gb|AAF36953.1|AF222718_27 ribosomal protein
S3 [Chrysodidymus synuroideus]
Length = 265
Score = 34.3 bits (77), Expect = 0.91
Identities = 26/62 (41%), Positives = 33/62 (52%), Gaps = 8/62 (12%)
Frame = -2
Query: 162 QLF*EVYLY---FYIINQI-NLYNNSNILVYLE*VDFRL*KSLYNLTYFLFQKK----KK 7
QL +YLY YI N N++ N NI + L+ +DF K NL F+F KK KK
Sbjct: 18 QLNSNIYLYKNLIYIDNSFENIFLNLNIYLILKQIDFSTNKINLNLILFIFSKKINFFKK 77
Query: 6 KL 1
KL
Sbjct: 78 KL 79
>ref|NP_702134.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497313|gb|AAN36858.1|AE014820_8 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1431
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/118 (20%), Positives = 51/118 (42%), Gaps = 5/118 (4%)
Frame = -2
Query: 426 CIHIQHLNVPSTL*HSKRKIVKEYGNLQDFNIILIIWIVVFFFR*AKNIGIVVCWGGNTV 247
C+ ++ N+ +TL H +K++ +Y N+ N I I ++ R KN+ ++ W
Sbjct: 604 CLKEKNYNIHNTLFHKIKKVLMKYANIIHSNNIYIKFVQNKLIRICKNVTDLLSWN---- 659
Query: 246 CRDL*SNLHQVQVRLHQIGKYLKA*AKCQLF*EVYLYFYII-----NQINLYNNSNIL 88
+ ++ + +Y +Y+YF+++ Q N+ N NI+
Sbjct: 660 --------YMLENMILSENQY------------IYVYFFLLKKNTKEQFNILNKDNII 697
>gb|EAA22391.1| serine/threonine-protein kinase [Plasmodium yoelii yoelii]
Length = 408
Score = 33.1 bits (74), Expect = 2.0
Identities = 13/17 (76%), Positives = 14/17 (81%)
Frame = +1
Query: 283 ILCLSEKKHYNPNNQNN 333
I CLS+KKHYN NN NN
Sbjct: 27 IQCLSQKKHYNNNNNNN 43
>ref|NP_705219.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615464|emb|CAD52455.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 620
Score = 31.6 bits (70), Expect = 5.9
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = +1
Query: 247 NSIPTPTHYNPYILCLSEKKHYNPNNQNNVKV 342
N+ +YN YIL L+ K+ N NN+NN K+
Sbjct: 469 NNKKNDDNYNEYILTLNNKEDVNINNENNSKL 500
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,310,008
Number of Sequences: 1393205
Number of extensions: 8283199
Number of successful extensions: 16334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16319
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
