Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019856A_C01 KMC019856A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191971.1| putative tetrahydrofolate synthase; protein id:... 139 2e-32
ref|NP_191969.1| putative tetrahydrofolate synthase; protein id:... 125 4e-28
ref|NP_181400.1| methylenetetrahydrofolate dehydrogenase; protei... 119 2e-26
gb|AAA74302.1| methylenetetrahydrofolate dehydrogenase gi|109521... 115 3e-25
pir||S53523 methylenetetrahydrofolate dehydrogenase (NADP) (EC 1... 115 3e-25
>ref|NP_191971.1| putative tetrahydrofolate synthase; protein id: At4g00620.1,
supported by cDNA: gi_16649148 [Arabidopsis thaliana]
gi|7488134|pir||T01226 probable
methylenetetrahydrofolate dehydrogenase (NADP) (EC
1.5.1.5) F6N23.26 - Arabidopsis thaliana
gi|3047116|gb|AAC13627.1| F6N23.26 gene product
[Arabidopsis thaliana] gi|7267401|emb|CAB80871.1|
putative tetrahydrofolate synthase [Arabidopsis
thaliana] gi|16649149|gb|AAL24426.1| Unknown protein
[Arabidopsis thaliana] gi|23197716|gb|AAN15385.1|
Unknown protein [Arabidopsis thaliana]
Length = 360
Score = 139 bits (350), Expect = 2e-32
Identities = 65/78 (83%), Positives = 72/78 (91%)
Frame = -1
Query: 538 MVRGSWIKPGAVIIDVGINPVEDPNSTRGYRLIGDVCYEEAIKVASAVTPVPGGVGPMTI 359
MVRGSWIKPGAV+IDVGINPVEDP++ RGYRL+GD+CYEEA KVASA+TPVPGGVGPMTI
Sbjct: 283 MVRGSWIKPGAVLIDVGINPVEDPSAARGYRLVGDICYEEASKVASAITPVPGGVGPMTI 342
Query: 358 AMLLPNTLNSAKRIPQFE 305
AMLL NTL SAKRI F+
Sbjct: 343 AMLLSNTLTSAKRIHNFQ 360
>ref|NP_191969.1| putative tetrahydrofolate synthase; protein id: At4g00600.1
[Arabidopsis thaliana] gi|7431820|pir||T01224 probable
methylenetetrahydrofolate dehydrogenase (NADP) (EC
1.5.1.5) F6N23.28 - Arabidopsis thaliana
gi|3047121|gb|AAC13632.1| similar to other
dehydrogenase/cyclohydrolase domains [Arabidopsis
thaliana] gi|7267399|emb|CAB80869.1| putative
tetrahydrofolate synthase [Arabidopsis thaliana]
Length = 310
Score = 125 bits (313), Expect = 4e-28
Identities = 59/78 (75%), Positives = 67/78 (85%)
Frame = -1
Query: 538 MVRGSWIKPGAVIIDVGINPVEDPNSTRGYRLIGDVCYEEAIKVASAVTPVPGGVGPMTI 359
MVRGSWIKPGAV+IDVGI PVEDP++ G RL+GD+CY EA K+ASA+TPVPG VGPMTI
Sbjct: 233 MVRGSWIKPGAVLIDVGIKPVEDPSAAGGERLVGDICYVEASKIASAITPVPGDVGPMTI 292
Query: 358 AMLLPNTLNSAKRIPQFE 305
AMLL NTL SAKRI F+
Sbjct: 293 AMLLSNTLTSAKRIHNFQ 310
>ref|NP_181400.1| methylenetetrahydrofolate dehydrogenase; protein id: At2g38660.1
[Arabidopsis thaliana] gi|25284864|pir||G84807
methylenetetrahydrofolate dehydrogenase [imported] -
Arabidopsis thaliana gi|3786006|gb|AAC67352.1|
methylenetetrahydrofolate dehydrogenase [Arabidopsis
thaliana]
Length = 350
Score = 119 bits (299), Expect = 2e-26
Identities = 56/74 (75%), Positives = 64/74 (85%)
Frame = -1
Query: 538 MVRGSWIKPGAVIIDVGINPVEDPNSTRGYRLIGDVCYEEAIKVASAVTPVPGGVGPMTI 359
+VRGSW+KPGAV+IDVG PVED + GYRL+GDVCYEEA+ VASA+TPVPGGVGPMTI
Sbjct: 275 LVRGSWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTI 334
Query: 358 AMLLPNTLNSAKRI 317
MLL NTL +AKRI
Sbjct: 335 TMLLCNTLEAAKRI 348
>gb|AAA74302.1| methylenetetrahydrofolate dehydrogenase gi|1095217|prf||2108274A
methylenetetrahydrofolate
dehydrogenase-cyclohydrolase-synthetase
Length = 933
Score = 115 bits (288), Expect = 3e-25
Identities = 52/73 (71%), Positives = 62/73 (84%)
Frame = -1
Query: 538 MVRGSWIKPGAVIIDVGINPVEDPNSTRGYRLIGDVCYEEAIKVASAVTPVPGGVGPMTI 359
MVRGSWIKPGAV+ID GINP+ DP G RL+GDV YEEA++VAS VTPVPGGVGPMT+
Sbjct: 219 MVRGSWIKPGAVVIDCGINPISDPTKKSGQRLVGDVAYEEAVQVASHVTPVPGGVGPMTV 278
Query: 358 AMLLPNTLNSAKR 320
AML+ NT+ +A+R
Sbjct: 279 AMLMRNTVQAARR 291
>pir||S53523 methylenetetrahydrofolate dehydrogenase (NADP) (EC 1.5.1.5) - fall
armyworm
Length = 933
Score = 115 bits (288), Expect = 3e-25
Identities = 52/73 (71%), Positives = 62/73 (84%)
Frame = -1
Query: 538 MVRGSWIKPGAVIIDVGINPVEDPNSTRGYRLIGDVCYEEAIKVASAVTPVPGGVGPMTI 359
MVRGSWIKPGAV+ID GINP+ DP G RL+GDV YEEA++VAS VTPVPGGVGPMT+
Sbjct: 219 MVRGSWIKPGAVVIDCGINPISDPTKKSGQRLVGDVAYEEAVQVASHVTPVPGGVGPMTV 278
Query: 358 AMLLPNTLNSAKR 320
AML+ NT+ +A+R
Sbjct: 279 AMLMRNTVQAARR 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,468,246
Number of Sequences: 1393205
Number of extensions: 10621565
Number of successful extensions: 28100
Number of sequences better than 10.0: 202
Number of HSP's better than 10.0 without gapping: 27214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27936
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
