Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019835A_C01 KMC019835A_c01
(388 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK68917.1|AF189282_7 putative polymerase [Bacteroides fragilis] 33 0.87
gb|AAM67149.1| unknown [Arabidopsis thaliana] 33 0.87
ref|NP_566805.1| expressed protein; protein id: At3g26960.1, sup... 33 0.87
ref|NP_733081.1| CG31108-PA [Drosophila melanogaster] gi|7301272... 32 1.9
gb|AAF79832.1|AC026875_12 T6D22.24 [Arabidopsis thaliana] 32 2.5
>gb|AAK68917.1|AF189282_7 putative polymerase [Bacteroides fragilis]
Length = 434
Score = 33.1 bits (74), Expect = 0.87
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 335 MW*LKEADYTSSLVLW*GYLCIHYYKFPKTKKLIYVILFSLLKVIDVLSLSLSPFI 168
+W L Y + LV + Y I +K+P T+K++ I+ + V+ ++S S FI
Sbjct: 155 IWILGNRSYATILVPFTSYFIISIWKYPFTRKIVVFIIGFIASVLILISQLFSRFI 210
>gb|AAM67149.1| unknown [Arabidopsis thaliana]
Length = 167
Score = 33.1 bits (74), Expect = 0.87
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 388 IYSINALTFRPSKRDITVCG 329
+Y NAL FRP KRD+ +CG
Sbjct: 146 VYGFNALNFRPFKRDLALCG 165
>ref|NP_566805.1| expressed protein; protein id: At3g26960.1, supported by cDNA:
96816. [Arabidopsis thaliana]
Length = 174
Score = 33.1 bits (74), Expect = 0.87
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 388 IYSINALTFRPSKRDITVCG 329
+Y NAL FRP KRD+ +CG
Sbjct: 153 VYGFNALNFRPFKRDLALCG 172
>ref|NP_733081.1| CG31108-PA [Drosophila melanogaster] gi|7301272|gb|AAF56402.1|
CG31108-PA [Drosophila melanogaster]
gi|21428544|gb|AAM49932.1| LD39904p [Drosophila
melanogaster]
Length = 917
Score = 32.0 bits (71), Expect = 1.9
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Frame = -2
Query: 279 LVYSLLQIPKNKKAHIC-YLVQPF--EGHRCPLSFSFTLHCFAALIVWQYYYHIM-LCQK 112
+V S QIP++++A + Y+V P +GH+C L + F LI++ Y I+ L
Sbjct: 343 IVNSPDQIPQDEQAVVSKYIVDPLCIDGHKCDLRVYVLVTSFDPLIIYLYEEGIVRLATV 402
Query: 111 KY--HACRIW 88
KY HA +W
Sbjct: 403 KYDRHADNLW 412
>gb|AAF79832.1|AC026875_12 T6D22.24 [Arabidopsis thaliana]
Length = 2621
Score = 31.6 bits (70), Expect = 2.5
Identities = 15/66 (22%), Positives = 40/66 (59%)
Frame = -3
Query: 284 GYLCIHYYKFPKTKKLIYVILFSLLKVIDVLSLSLSPFIVLLH*LFGNTIIILCYAKKNI 105
G + + Y+ + +++V F+++ + ++S ++SP VL+H L+ ++ + + K+N+
Sbjct: 632 GIVELCYFLYGVESNVLHVKSFTIMATMILVSSTISP--VLIHYLYDSSKRFISFQKRNL 689
Query: 104 MHVEFG 87
M ++ G
Sbjct: 690 MSLKLG 695
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,249,695
Number of Sequences: 1393205
Number of extensions: 6273864
Number of successful extensions: 15176
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 14830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15176
length of database: 448,689,247
effective HSP length: 104
effective length of database: 303,795,927
effective search space used: 7291102248
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
