Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019830A_C01 KMC019830A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568264.1| RING finger-like protein; protein id: At5g12310... 135 2e-31
ref|NP_568374.1| putative protein; protein id: At5g19430.1, supp... 135 2e-31
dbj|BAB64711.1| P0431G06.23 [Oryza sativa (japonica cultivar-gro... 116 1e-25
gb|EAA06992.1| agCP7184 [Anopheles gambiae str. PEST] 50 1e-05
gb|AAM63234.1| RING zinc finger protein-like [Arabidopsis thaliana] 49 3e-05
>ref|NP_568264.1| RING finger-like protein; protein id: At5g12310.1 [Arabidopsis
thaliana] gi|14586361|emb|CAC42892.1| RING finger-like
protein [Arabidopsis thaliana]
gi|21436021|gb|AAM51588.1| AT5g19430/F7K24_180
[Arabidopsis thaliana] gi|26450511|dbj|BAC42369.1|
putative RING finger [Arabidopsis thaliana]
Length = 254
Score = 135 bits (341), Expect = 2e-31
Identities = 67/110 (60%), Positives = 82/110 (73%)
Frame = +1
Query: 187 MTSSLVQIQDEEQVVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQ 366
M+SS+ + +E+QV D L +D EK + + ++ FGNHGG CAICLD I LQ
Sbjct: 1 MSSSIQIVVEEKQV----DVLPLQDQD---EKKTPQVFNELSFGNHGGCCAICLDTIPLQ 53
Query: 367 ETALVKGCEHAYCVTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIE 516
ETA+VKGCEHAYCVTCILRWA+Y K TCPQCK PF+FLNVHR+LDGS+E
Sbjct: 54 ETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHRALDGSVE 103
>ref|NP_568374.1| putative protein; protein id: At5g19430.1, supported by cDNA:
gi_13605552, supported by cDNA: gi_16323293 [Arabidopsis
thaliana] gi|13605553|gb|AAK32770.1|AF361602_1
AT5g19430/F7K24_180 [Arabidopsis thaliana]
gi|16323294|gb|AAL15402.1| AT5g19430/F7K24_180
[Arabidopsis thaliana]
Length = 255
Score = 135 bits (341), Expect = 2e-31
Identities = 64/108 (59%), Positives = 81/108 (74%)
Frame = +1
Query: 193 SSLVQIQDEEQVVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQET 372
SS+ +I E+QV+ DL++++ +K EE H+ FGNHGG CAICL +I LQET
Sbjct: 2 SSVTEIVSEQQVI--DGIQDLALQNQ-DKKKIQEEIHEPSFGNHGGCCAICLSEIPLQET 58
Query: 373 ALVKGCEHAYCVTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIE 516
A+VKGCEH YCVTCILRWA+ TCPQCK+PF+FL+VHR+LDGSIE
Sbjct: 59 AMVKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIE 106
>dbj|BAB64711.1| P0431G06.23 [Oryza sativa (japonica cultivar-group)]
gi|20161860|dbj|BAB90773.1| B1139B11.1 [Oryza sativa
(japonica cultivar-group)]
Length = 280
Score = 116 bits (291), Expect = 1e-25
Identities = 53/78 (67%), Positives = 61/78 (77%), Gaps = 3/78 (3%)
Frame = +1
Query: 289 DEETHKGGFGNHG---GICAICLDKIVLQETALVKGCEHAYCVTCILRWATYNNKVTCPQ 459
D+ GG G+ G+CAICLDKI LQETALVKGC+HAYCVTCILRWA+Y CPQ
Sbjct: 34 DKAAAVGGGGDRAVDCGVCAICLDKIALQETALVKGCDHAYCVTCILRWASYKQTPQCPQ 93
Query: 460 CKNPFEFLNVHRSLDGSI 513
CK+PF+FL+VHRSLDG I
Sbjct: 94 CKHPFDFLSVHRSLDGCI 111
>gb|EAA06992.1| agCP7184 [Anopheles gambiae str. PEST]
Length = 560
Score = 50.4 bits (119), Expect = 1e-05
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Frame = +1
Query: 256 SIEDHLVEKG---------------SDEETHKGGFGNHGGICAICLDKIVLQETALVKGC 390
S E+ L+EKG + +E+ N C ICL + QE + + C
Sbjct: 83 SDEEQLLEKGDKDAVAAVLASKLGYASDESSGSSSSNDSEKCPICLLSLHNQEVGVPEVC 142
Query: 391 EHAYCVTCILRWATYNNKVTCPQCKNPFEFLNVHRSLD 504
EH +C CI W+ N TCP + FE +N++ L+
Sbjct: 143 EHVFCAPCIEEWS--RNVSTCPIDRKGFELINIYADLE 178
>gb|AAM63234.1| RING zinc finger protein-like [Arabidopsis thaliana]
Length = 176
Score = 48.9 bits (115), Expect = 3e-05
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 295 ETHKGGFGNHGGICAICLDKIVLQ-ETALVKGCEHAYCVTCILRWATYNNKVTCPQCKNP 471
E + GFG+ CA+CL + + E + C+H + +C+ RW N++TCP C+ P
Sbjct: 92 ELTRPGFGSGSDCCAVCLHEFENEDEIRRLTNCQHIFHRSCLDRWMMGYNQMTCPLCRTP 151
Query: 472 F 474
F
Sbjct: 152 F 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,259,381
Number of Sequences: 1393205
Number of extensions: 10960144
Number of successful extensions: 34064
Number of sequences better than 10.0: 1054
Number of HSP's better than 10.0 without gapping: 32300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33903
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
