Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019822A_C01 KMC019822A_c01
(445 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC17795.1| microtubule-associated protein MAP65-1b [Nicotia... 103 6e-22
emb|CAC17796.1| microtubule-associated protein MAP65-1c [Nicotia... 103 6e-22
emb|CAC17794.1| microtubule-associated protein MAP65-1a [Nicotia... 99 1e-20
emb|CAD58680.1| 65kD microtubule associated protein [Daucus carota] 92 1e-18
ref|NP_200334.1| putative protein; protein id: At5g55230.1 [Arab... 89 2e-17
>emb|CAC17795.1| microtubule-associated protein MAP65-1b [Nicotiana tabacum]
Length = 584
Score = 103 bits (256), Expect = 6e-22
Identities = 51/76 (67%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = -2
Query: 444 RPVSAKKGAGPRVNGGANGTPNRRLSLNAHQNGSRSISKDGKRDNTRPVAPVNYVAIS-N 268
RP+ +K GPR NG ANG+ NRRLSLN+HQNGSRS +KDGKRD++R VAPVN AIS +
Sbjct: 509 RPLGTQKVVGPRANGSANGSANRRLSLNSHQNGSRSTTKDGKRDHSRKVAPVNNFAISKD 568
Query: 267 DAASQVSGTEPIPASP 220
DAAS +SGTE IP++P
Sbjct: 569 DAASHISGTERIPSTP 584
>emb|CAC17796.1| microtubule-associated protein MAP65-1c [Nicotiana tabacum]
Length = 582
Score = 103 bits (256), Expect = 6e-22
Identities = 51/76 (67%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = -2
Query: 444 RPVSAKKGAGPRVNGGANGTPNRRLSLNAHQNGSRSISKDGKRDNTRPVAPVNYVAIS-N 268
RP+ KK GPR NG ANG+ NRRLSLN+HQNGSRS +KDGKRD++R VAPVN AIS +
Sbjct: 507 RPLGTKKVVGPRANGNANGSANRRLSLNSHQNGSRSTTKDGKRDHSRKVAPVNNFAISKD 566
Query: 267 DAASQVSGTEPIPASP 220
DAAS +SG+E IP++P
Sbjct: 567 DAASHISGSERIPSTP 582
>emb|CAC17794.1| microtubule-associated protein MAP65-1a [Nicotiana tabacum]
Length = 580
Score = 99.0 bits (245), Expect = 1e-20
Identities = 49/76 (64%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = -2
Query: 444 RPVSAKKGAGPRVNGGANGTPNRRLSLNAHQNGSRSISKDGKRDNTRPVAPVNYVAIS-N 268
RP+ KK GPR NG ANG +RRLSLN+HQNGSRS +KDGKRD TRP+AP+NYVA++ +
Sbjct: 506 RPLGPKKVTGPRANGSANGPTSRRLSLNSHQNGSRSTNKDGKRD-TRPIAPLNYVAMTKD 564
Query: 267 DAASQVSGTEPIPASP 220
DAAS +SG+E P++P
Sbjct: 565 DAASHISGSEHSPSTP 580
>emb|CAD58680.1| 65kD microtubule associated protein [Daucus carota]
Length = 576
Score = 92.0 bits (227), Expect = 1e-18
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = -2
Query: 444 RPVSAKKGAGPRVNGGANGTPNRRLSLNAHQNGSRSISKDGKRDNTRPVAPVNYVAISND 265
RPV KK G R NG ANGTPNRRLSLNAHQNGSRSI+KDG+R++ R AP + D
Sbjct: 508 RPVGTKKAVGSRANG-ANGTPNRRLSLNAHQNGSRSINKDGRRESMRAAAP-----LKED 561
Query: 264 AASQVSGTEPIPASP 220
A S +SG+EP+P++P
Sbjct: 562 AGSCISGSEPLPSTP 576
>ref|NP_200334.1| putative protein; protein id: At5g55230.1 [Arabidopsis thaliana]
gi|9758120|dbj|BAB08592.1|
gene_id:MCO15.18~pir||T04799~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|28416713|gb|AAO42887.1| At5g55230 [Arabidopsis
thaliana]
Length = 587
Score = 88.6 bits (218), Expect = 2e-17
Identities = 53/82 (64%), Positives = 59/82 (71%), Gaps = 7/82 (8%)
Frame = -2
Query: 444 RPVSAKKGAGPRVN-GGANGTPNRRLSLNAHQNGSRSISKDGKRDNT--RPVAPVNYVAI 274
RPVSAKK GPR N GGANGT NRRLSLNA+QNGSRS +K+ R T RP AP NYVAI
Sbjct: 506 RPVSAKKTVGPRANNGGANGTHNRRLSLNANQNGSRSTAKEAGRRETLNRPAAPTNYVAI 565
Query: 273 SND--AASQVSGT--EPIPASP 220
S + A+S VSG +PASP
Sbjct: 566 SKEEAASSPVSGAADHQVPASP 587
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,051,089
Number of Sequences: 1393205
Number of extensions: 7901831
Number of successful extensions: 20005
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19982
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
