Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019813A_C01 KMC019813A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P29450|THIF_PEA Thioredoxin F-type, chloroplast precursor (TR... 228 5e-59
ref|NP_197144.1| thioredoxin f2 (gb|AAD35004.1); protein id: At5... 201 5e-51
ref|NP_186922.1| thioredoxin f1; protein id: At3g02730.1, suppor... 197 5e-50
gb|AAD35003.1|AF144385_1 thioredoxin f1 [Arabidopsis thaliana] 196 2e-49
sp|O81332|THIF_MESCR Thioredoxin F-type, chloroplast precursor (... 195 2e-49
>sp|P29450|THIF_PEA Thioredoxin F-type, chloroplast precursor (TRX-F)
gi|100070|pir||S20929 thioredoxin f precursor - garden
pea gi|20907|emb|CAA45098.1| thioredoxin F [Pisum
sativum] gi|1388086|gb|AAC49357.1| thioredoxin f
Length = 182
Score = 228 bits (580), Expect = 5e-59
Identities = 111/122 (90%), Positives = 119/122 (96%)
Frame = -1
Query: 533 VRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTQWCGPCKVIAPKYQELA 354
VRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFT+WCGPCKVIAP Y+EL+
Sbjct: 61 VRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLYEELS 120
Query: 353 EKNLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKIVKEITGAKYDDLVAAIETVR 174
+K LDVVFLKLDCNQDNK LAKELGIKVVPTFKILKD+KIVKE+TGAK+DDLVAAI+TVR
Sbjct: 121 QKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAIDTVR 180
Query: 173 SS 168
SS
Sbjct: 181 SS 182
>ref|NP_197144.1| thioredoxin f2 (gb|AAD35004.1); protein id: At5g16400.1, supported
by cDNA: gi_16323395, supported by cDNA: gi_4973253
[Arabidopsis thaliana] gi|11135405|sp|Q9XFH9|THF2_ARATH
Thioredoxin F-type 2, chloroplast precursor (TRX-F2)
gi|4973254|gb|AAD35004.1|AF144386_1 thioredoxin f2
[Arabidopsis thaliana] gi|9759122|dbj|BAB09607.1|
thioredoxin f2 [Arabidopsis thaliana]
gi|13878187|gb|AAK44171.1|AF370356_1 putative
thioredoxin f2 protein [Arabidopsis thaliana]
gi|16323396|gb|AAL15192.1| putative thioredoxin f2
protein [Arabidopsis thaliana]
Length = 185
Score = 201 bits (511), Expect = 5e-51
Identities = 98/121 (80%), Positives = 110/121 (89%)
Frame = -1
Query: 533 VRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTQWCGPCKVIAPKYQELA 354
VR SLET VTVG+VTEV+KDTFWPIV AAGDK VVLDM+TQWCGPCKVIAPKY+EL+
Sbjct: 66 VRCSLETVN--VTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIAPKYKELS 123
Query: 353 EKNLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKIVKEITGAKYDDLVAAIETVR 174
EK D+VFLKLDCNQDNKPLAKELGI+VVPTFKILKD+K+VKE+TGAKY+DL+AAIE R
Sbjct: 124 EKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEAAR 183
Query: 173 S 171
S
Sbjct: 184 S 184
>ref|NP_186922.1| thioredoxin f1; protein id: At3g02730.1, supported by cDNA: 11767.,
supported by cDNA: gi_17529209, supported by cDNA:
gi_20466040, supported by cDNA: gi_4973251 [Arabidopsis
thaliana] gi|27735269|sp|Q9XFH8|THF1_ARATH Thioredoxin
F-type 1, chloroplast precursor (TRX-F1)
gi|6728989|gb|AAF26987.1|AC018363_32 thioredoxin f1
[Arabidopsis thaliana] gi|17529210|gb|AAL38832.1|
putative thioredoxin f1 protein [Arabidopsis thaliana]
gi|20466041|gb|AAM20355.1| putative thioredoxin f1
protein [Arabidopsis thaliana]
gi|21537004|gb|AAM61345.1| thioredoxin f1 [Arabidopsis
thaliana]
Length = 178
Score = 197 bits (502), Expect = 5e-50
Identities = 97/122 (79%), Positives = 110/122 (89%)
Frame = -1
Query: 533 VRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTQWCGPCKVIAPKYQELA 354
VR SLET V+VG+VTEV+KDTFWPIV AAG+K VVLDM+TQWCGPCKVIAPKY+ L+
Sbjct: 56 VRCSLETVN--VSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALS 113
Query: 353 EKNLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKIVKEITGAKYDDLVAAIETVR 174
EK DVVFLKLDCN DN+PLAKELGI+VVPTFKILKD+K+VKE+TGAKYDDLVAAIET R
Sbjct: 114 EKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETAR 173
Query: 173 SS 168
S+
Sbjct: 174 SA 175
>gb|AAD35003.1|AF144385_1 thioredoxin f1 [Arabidopsis thaliana]
Length = 178
Score = 196 bits (497), Expect = 2e-49
Identities = 96/122 (78%), Positives = 109/122 (88%)
Frame = -1
Query: 533 VRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTQWCGPCKVIAPKYQELA 354
VR SLET V+VG+VTEV+KDTFWPIV AAG+K VVLDM+TQWCGPCKVIAPKY+ L+
Sbjct: 56 VRCSLETVN--VSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALS 113
Query: 353 EKNLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKIVKEITGAKYDDLVAAIETVR 174
EK DVVFLKLDCN DN+PL KELGI+VVPTFKILKD+K+VKE+TGAKYDDLVAAIET R
Sbjct: 114 EKYDDVVFLKLDCNPDNRPLPKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETAR 173
Query: 173 SS 168
S+
Sbjct: 174 SA 175
>sp|O81332|THIF_MESCR Thioredoxin F-type, chloroplast precursor (TRX-F)
gi|7430844|pir||T12261 thioredoxin f precursor - common
ice plant gi|3202022|gb|AAC19392.1| thioredoxin F
precursor [Mesembryanthemum crystallinum]
Length = 191
Score = 195 bits (496), Expect = 2e-49
Identities = 98/125 (78%), Positives = 107/125 (85%), Gaps = 3/125 (2%)
Frame = -1
Query: 533 VRSSLETA---GPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTQWCGPCKVIAPKYQ 363
V++SLETA VGKVTEV+KDTFWPI N AGDK VVLDM+TQWCGPCKV+APKYQ
Sbjct: 67 VKASLETAVGAESETLVGKVTEVDKDTFWPIANGAGDKPVVLDMYTQWCGPCKVMAPKYQ 126
Query: 362 ELAEKNLDVVFLKLDCNQDNKPLAKELGIKVVPTFKILKDSKIVKEITGAKYDDLVAAIE 183
ELAEK LDVVFLKLDCNQ+NKPLAKELGI+VVPTFKILK KIV E+TGAK+D LVAAIE
Sbjct: 127 ELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIE 186
Query: 182 TVRSS 168
RSS
Sbjct: 187 AARSS 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,044,629
Number of Sequences: 1393205
Number of extensions: 9800517
Number of successful extensions: 35577
Number of sequences better than 10.0: 986
Number of HSP's better than 10.0 without gapping: 31202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35065
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
