Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019810A_C01 KMC019810A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SM59|PGMP_PEA Phosphoglucomutase, chloroplast precursor (Gl... 103 9e-22
ref|NP_199995.1| phosphoglucomutase (emb|CAB64725.1); protein id... 103 1e-21
pir||T52656 phosphoglucomutase (EC 5.4.2.2) precursor [validated... 103 1e-21
sp|Q9M4G5|PGMP_SOLTU Phosphoglucomutase, chloroplast precursor (... 102 3e-21
sp|Q9SMM0|PGMP_BRANA Phosphoglucomutase, chloroplast precursor (... 101 6e-21
>sp|Q9SM59|PGMP_PEA Phosphoglucomutase, chloroplast precursor (Glucose phosphomutase)
(PGM) gi|6272283|emb|CAB60128.1| plastidial
phosphoglucomutase [Pisum sativum]
Length = 626
Score = 103 bits (258), Expect = 9e-22
Identities = 53/54 (98%), Positives = 53/54 (98%)
Frame = -3
Query: 507 SAGATVRVYIEQFEADVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 346
SAGATVRVYIEQFE DVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT
Sbjct: 573 SAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 626
>ref|NP_199995.1| phosphoglucomutase (emb|CAB64725.1); protein id: At5g51820.1,
supported by cDNA: gi_12004569, supported by cDNA:
gi_20466483 [Arabidopsis thaliana]
gi|12585323|sp|Q9SCY0|PGMP_ARATH Phosphoglucomutase,
chloroplast precursor (Glucose phosphomutase) (PGM)
gi|10177881|dbj|BAB11251.1| phosphoglucomutase
[Arabidopsis thaliana]
gi|12004570|gb|AAG44095.1|AF216580_1 phosphoglucomutase
precursor [Arabidopsis thaliana]
gi|20466484|gb|AAM20559.1| phosphoglucomutase
[Arabidopsis thaliana] gi|22136446|gb|AAM91301.1|
phosphoglucomutase [Arabidopsis thaliana]
Length = 623
Score = 103 bits (257), Expect = 1e-21
Identities = 52/54 (96%), Positives = 53/54 (97%)
Frame = -3
Query: 507 SAGATVRVYIEQFEADVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 346
SAGATVR+YIEQFE DVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT
Sbjct: 570 SAGATVRIYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 623
>pir||T52656 phosphoglucomutase (EC 5.4.2.2) precursor [validated] - Arabidopsis
thaliana gi|6686811|emb|CAB64725.1| phosphoglucomutase
[Arabidopsis thaliana]
Length = 623
Score = 103 bits (257), Expect = 1e-21
Identities = 52/54 (96%), Positives = 53/54 (97%)
Frame = -3
Query: 507 SAGATVRVYIEQFEADVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 346
SAGATVR+YIEQFE DVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT
Sbjct: 570 SAGATVRIYIEQFEPDVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 623
>sp|Q9M4G5|PGMP_SOLTU Phosphoglucomutase, chloroplast precursor (Glucose phosphomutase)
(PGM) gi|8250622|emb|CAB93680.1| plastidic
phosphoglucomutase [Solanum tuberosum]
Length = 632
Score = 102 bits (254), Expect = 3e-21
Identities = 51/54 (94%), Positives = 53/54 (97%)
Frame = -3
Query: 507 SAGATVRVYIEQFEADVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 346
SAGATVR+YIEQFE DVSKHD+DAQIALKPLIDLALSVSKLKDFTGREKPTVIT
Sbjct: 579 SAGATVRIYIEQFEPDVSKHDMDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 632
>sp|Q9SMM0|PGMP_BRANA Phosphoglucomutase, chloroplast precursor (Glucose phosphomutase)
(PGM) gi|6272125|emb|CAB60109.1| plastidial
phosphoglucomutase [Brassica napus]
Length = 629
Score = 101 bits (251), Expect = 6e-21
Identities = 50/54 (92%), Positives = 53/54 (97%)
Frame = -3
Query: 507 SAGATVRVYIEQFEADVSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 346
SAGATVR+YIEQFE DVSKHDVDAQIA+KPLIDLALSVSKLK+FTGREKPTVIT
Sbjct: 576 SAGATVRIYIEQFEPDVSKHDVDAQIAIKPLIDLALSVSKLKEFTGREKPTVIT 629
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,765,632
Number of Sequences: 1393205
Number of extensions: 6260874
Number of successful extensions: 16751
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 16208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16709
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
