Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019784A_C01 KMC019784A_c01
(447 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T10078 hypothetical protein - castor bean gi|1632831|emb|CA... 144 2e-34
ref|NP_565981.1| expressed protein; protein id: At2g42680.1, sup... 142 7e-34
gb|AAF81108.1|AF232062_1 multiprotein bridging factor 1 [Solanum... 141 2e-33
dbj|BAB88859.1| putative multiprotein bridging factor 1 [Nicotia... 141 2e-33
ref|NP_191427.1| transcriptional coactivator - like protein; pro... 139 1e-32
>pir||T10078 hypothetical protein - castor bean gi|1632831|emb|CAA89698.1| orf
[Ricinus communis]
Length = 142
Score = 144 bits (363), Expect = 2e-34
Identities = 70/80 (87%), Positives = 78/80 (97%)
Frame = -1
Query: 447 NTKRLDEDTENLTHDRVPTELKKAIMQARMDKKLTQAQLAQIIHEKPQVIQEYESGKAIP 268
NT++LDE+TENLTHDRVPTELKKAIMQARM+KK TQAQLAQ+I+EKPQ+IQEYESGKAIP
Sbjct: 63 NTRKLDEETENLTHDRVPTELKKAIMQARMEKKFTQAQLAQMINEKPQIIQEYESGKAIP 122
Query: 267 NQQIIGKLERALGAQLRGKK 208
NQQIIGKLERALG +LRGKK
Sbjct: 123 NQQIIGKLERALGVKLRGKK 142
>ref|NP_565981.1| expressed protein; protein id: At2g42680.1, supported by cDNA:
41712., supported by cDNA: gi_13878034, supported by
cDNA: gi_17104598 [Arabidopsis thaliana]
gi|25349671|pir||H84856 hypothetical protein At2g42680
[imported] - Arabidopsis thaliana
gi|4512684|gb|AAD21738.1| expressed protein [Arabidopsis
thaliana] gi|13878035|gb|AAK44095.1|AF370280_1 unknown
protein [Arabidopsis thaliana]
gi|17104599|gb|AAL34188.1| unknown protein [Arabidopsis
thaliana] gi|20198082|gb|AAM15391.1| expressed protein
[Arabidopsis thaliana] gi|21593718|gb|AAM65685.1|
transcriptional coactivator-like protein [Arabidopsis
thaliana]
Length = 142
Score = 142 bits (359), Expect = 7e-34
Identities = 71/80 (88%), Positives = 77/80 (95%)
Frame = -1
Query: 447 NTKRLDEDTENLTHDRVPTELKKAIMQARMDKKLTQAQLAQIIHEKPQVIQEYESGKAIP 268
NTK LD+DTENLTH+RVPTELKKAIMQAR DKKLTQ+QLAQII+EKPQVIQEYESGKAIP
Sbjct: 63 NTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIP 122
Query: 267 NQQIIGKLERALGAQLRGKK 208
NQQI+ KLERALGA+LRGKK
Sbjct: 123 NQQILSKLERALGAKLRGKK 142
>gb|AAF81108.1|AF232062_1 multiprotein bridging factor 1 [Solanum tuberosum]
Length = 139
Score = 141 bits (355), Expect = 2e-33
Identities = 68/80 (85%), Positives = 78/80 (97%)
Frame = -1
Query: 447 NTKRLDEDTENLTHDRVPTELKKAIMQARMDKKLTQAQLAQIIHEKPQVIQEYESGKAIP 268
NT++LDEDTENL+H++VPTELKKAIMQAR DKKLTQ+QLAQ+I+EKPQ+IQEYESGKAIP
Sbjct: 60 NTRKLDEDTENLSHEKVPTELKKAIMQARQDKKLTQSQLAQLINEKPQIIQEYESGKAIP 119
Query: 267 NQQIIGKLERALGAQLRGKK 208
NQQII KLERALGA+LRGKK
Sbjct: 120 NQQIISKLERALGAKLRGKK 139
>dbj|BAB88859.1| putative multiprotein bridging factor 1 [Nicotiana tabacum]
Length = 140
Score = 141 bits (355), Expect = 2e-33
Identities = 69/80 (86%), Positives = 76/80 (94%)
Frame = -1
Query: 447 NTKRLDEDTENLTHDRVPTELKKAIMQARMDKKLTQAQLAQIIHEKPQVIQEYESGKAIP 268
NT++LDEDTENL H +VPTELKKAIMQAR DKKLTQAQLAQ+I+EKPQ+IQEYESGKAIP
Sbjct: 61 NTRKLDEDTENLAHQKVPTELKKAIMQARQDKKLTQAQLAQLINEKPQIIQEYESGKAIP 120
Query: 267 NQQIIGKLERALGAQLRGKK 208
NQQII KLERALGA+LRGKK
Sbjct: 121 NQQIISKLERALGAKLRGKK 140
>ref|NP_191427.1| transcriptional coactivator - like protein; protein id:
At3g58680.1, supported by cDNA: 112835., supported by
cDNA: gi_11908123, supported by cDNA: gi_12642935,
supported by cDNA: gi_13265583, supported by cDNA:
gi_14596124, supported by cDNA: gi_20148316 [Arabidopsis
thaliana] gi|11281987|pir||T49151 transcription
coactivator-like protein - Arabidopsis thaliana
gi|7630063|emb|CAB88285.1| transcriptional
coactivator-like protein [Arabidopsis thaliana]
gi|11692930|gb|AAG40068.1|AF324717_1 AT3g58680
[Arabidopsis thaliana]
gi|11908124|gb|AAG41491.1|AF326909_1 putative
transcriptional coactivator protein [Arabidopsis
thaliana] gi|12642936|gb|AAK00410.1|AF339728_1 putative
transcriptional coactivator protein [Arabidopsis
thaliana] gi|14596125|gb|AAK68790.1| transcriptional
coactivator-like protein [Arabidopsis thaliana]
gi|20148317|gb|AAM10049.1| transcriptional
coactivator-like protein [Arabidopsis thaliana]
gi|21536830|gb|AAM61162.1| transcriptional
coactivator-like protein [Arabidopsis thaliana]
Length = 142
Score = 139 bits (349), Expect = 1e-32
Identities = 68/80 (85%), Positives = 77/80 (96%)
Frame = -1
Query: 447 NTKRLDEDTENLTHDRVPTELKKAIMQARMDKKLTQAQLAQIIHEKPQVIQEYESGKAIP 268
NTK+LD+DTENL+HDRVPTELKKAIMQAR +KKLTQ+QLA +I+EKPQVIQEYESGKAIP
Sbjct: 63 NTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIP 122
Query: 267 NQQIIGKLERALGAQLRGKK 208
NQQI+ KLERALGA+LRGKK
Sbjct: 123 NQQILSKLERALGAKLRGKK 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,620,683
Number of Sequences: 1393205
Number of extensions: 7981581
Number of successful extensions: 17863
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 17570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17861
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
