Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019774A_C01 KMC019774A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65900.1| protein kinase, putative [Arabidopsis thaliana] 42 0.003
ref|NP_566530.1| protein kinase, putative; protein id: At3g15890... 42 0.003
dbj|BAA78743.1| ESTs C22458(C62866),C22459(C62866) correspond to... 39 0.024
ref|NP_776281.1| NADH dehydrogenase subunit 3 [Branchiostoma bel... 34 1.00
ref|NP_150504.1| LSDV070 hypothetical protein [lumpy skin diseas... 33 2.2
>gb|AAM65900.1| protein kinase, putative [Arabidopsis thaliana]
Length = 361
Score = 42.4 bits (98), Expect = 0.003
Identities = 21/48 (43%), Positives = 31/48 (63%)
Frame = -2
Query: 484 ESKDKLSQLENHELFKNPPGVGHDDGTSAAEGSSDFISEEKESKHELE 341
ESK+K+S+LE + LFKNP ++ AE SSD I E+K+ + + E
Sbjct: 314 ESKEKISELEANPLFKNPYSSNENNREHVAEESSDVILEDKDHQQQQE 361
>ref|NP_566530.1| protein kinase, putative; protein id: At3g15890.1, supported by
cDNA: 6166. [Arabidopsis thaliana]
gi|9294592|dbj|BAB02873.1| protein kinase-like protein
[Arabidopsis thaliana]
Length = 361
Score = 42.4 bits (98), Expect = 0.003
Identities = 21/48 (43%), Positives = 31/48 (63%)
Frame = -2
Query: 484 ESKDKLSQLENHELFKNPPGVGHDDGTSAAEGSSDFISEEKESKHELE 341
ESK+K+S+LE + LFKNP ++ AE SSD I E+K+ + + E
Sbjct: 314 ESKEKISELEANPLFKNPYSSNENNREHVAEESSDVILEDKDHQQQQE 361
>dbj|BAA78743.1| ESTs C22458(C62866),C22459(C62866) correspond to a region of the
predicted gene.~Similar to genomic sequence of
Arabidopsis thaliana BAC F8A5, complete
sequence.(AC002292) [Oryza sativa (japonica
cultivar-group)]
Length = 429
Score = 39.3 bits (90), Expect = 0.024
Identities = 21/44 (47%), Positives = 27/44 (60%)
Frame = -2
Query: 490 KGESKDKLSQLENHELFKNPPGVGHDDGTSAAEGSSDFISEEKE 359
KGESK+ LS+LEN ELF+ P G S EGSSD + + +
Sbjct: 382 KGESKEMLSRLENDELFR-PDSTVSSHGMSTPEGSSDCVPKNDQ 424
>ref|NP_776281.1| NADH dehydrogenase subunit 3 [Branchiostoma belcheri]
gi|27753539|dbj|BAC55199.1| NADH dehydrogenase subunit 3
[Branchiostoma belcheri]
Length = 117
Score = 33.9 bits (76), Expect = 1.00
Identities = 26/82 (31%), Positives = 38/82 (45%), Gaps = 5/82 (6%)
Frame = -3
Query: 270 SGLVFFLSLCTVGIILFMRGNICHPFIKAAGARLPYYECGYEPCKIAR---SLELGI*CV 100
S LVF L L +G+ P I +L YECG++P AR SL + +
Sbjct: 12 SALVFLLLLVGLGL----------PSIYPDNEKLSAYECGFDPMGSARLPFSLRFFLVAI 61
Query: 99 EYT--DCEIVIAYPYFHGIIYA 40
+ D EI + PY G++Y+
Sbjct: 62 LFLLFDLEIALILPYPMGLLYS 83
>ref|NP_150504.1| LSDV070 hypothetical protein [lumpy skin disease virus]
gi|21492523|ref|NP_659642.1| hypothetical protein
[Sheeppox virus] gi|15149081|gb|AAK85031.1| LSDV070
hypothetical protein [lumpy skin disease virus]
gi|22595605|gb|AAN02638.1| hypothetical protein [lumpy
skin disease virus] gi|22595763|gb|AAN02795.1|
hypothetical protein [lumpy skin disease virus]
Length = 133
Score = 32.7 bits (73), Expect = 2.2
Identities = 17/39 (43%), Positives = 22/39 (55%), Gaps = 5/39 (12%)
Frame = -3
Query: 174 RLPYYECGYEPCK-----IARSLELGI*CVEYTDCEIVI 73
RLPYY C YEPCK I +SL+ I +DC + +
Sbjct: 36 RLPYY-CWYEPCKRSDALIVKSLKKNISLCNISDCRVTL 73
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,876,231
Number of Sequences: 1393205
Number of extensions: 9273922
Number of successful extensions: 27532
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27479
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
