Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019771A_C01 KMC019771A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175679.1| unknown protein; protein id: At1g52700.1 [Arabi... 49 4e-05
ref|NP_188186.1| putative lysophospholipase; protein id: At3g156... 45 5e-04
gb|AAO60427.1| FPh1 [Gossypium hirsutum] 40 0.012
dbj|BAB62566.1| OSJNBa0089K24.24 [Oryza sativa (japonica cultiva... 40 0.012
dbj|BAB17082.1| P0410E01.3 [Oryza sativa (japonica cultivar-grou... 40 0.016
>ref|NP_175679.1| unknown protein; protein id: At1g52700.1 [Arabidopsis thaliana]
Length = 223
Score = 48.5 bits (114), Expect = 4e-05
Identities = 21/26 (80%), Positives = 23/26 (87%)
Frame = -1
Query: 462 LGHYTVPREMDEVSNWLRTSLGLEGA 385
LGHYTVPREMDEV +WL T LGLEG+
Sbjct: 197 LGHYTVPREMDEVVHWLTTMLGLEGS 222
>ref|NP_188186.1| putative lysophospholipase; protein id: At3g15650.1 [Arabidopsis
thaliana] gi|11994337|dbj|BAB02296.1|
lysophospholipase-like protein [Arabidopsis thaliana]
Length = 255
Score = 45.1 bits (105), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = -1
Query: 462 LGHYTVPREMDEVSNWLRTSLGLEGA 385
LGHYTVP+EMDEV +WL + LGLEG+
Sbjct: 229 LGHYTVPKEMDEVVHWLVSRLGLEGS 254
>gb|AAO60427.1| FPh1 [Gossypium hirsutum]
Length = 159
Score = 40.4 bits (93), Expect = 0.012
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = -1
Query: 462 LGHYTVPREMDEVSNWLRTSLGLEG 388
LGHYT+P EM+EV WL + LGL G
Sbjct: 132 LGHYTIPEEMEEVCAWLTSKLGLNG 156
>dbj|BAB62566.1| OSJNBa0089K24.24 [Oryza sativa (japonica cultivar-group)]
Length = 257
Score = 40.4 bits (93), Expect = 0.012
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -1
Query: 483 VLSFFCSLGHYTVPREMDEVSNWLRTSLGLEGA 385
V + LGHYTVP EMDEV WL +LG+ +
Sbjct: 222 VFKSYNRLGHYTVPEEMDEVCKWLTANLGVSSS 254
>dbj|BAB17082.1| P0410E01.3 [Oryza sativa (japonica cultivar-group)]
gi|21104686|dbj|BAB93276.1| P0046B10.16 [Oryza sativa
(japonica cultivar-group)]
Length = 200
Score = 40.0 bits (92), Expect = 0.016
Identities = 16/28 (57%), Positives = 21/28 (74%)
Frame = -1
Query: 462 LGHYTVPREMDEVSNWLRTSLGLEGA*G 379
LGHYT+P EMD+V WL + LGL+ + G
Sbjct: 173 LGHYTIPEEMDDVCKWLSSRLGLDRSRG 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,389,357
Number of Sequences: 1393205
Number of extensions: 9091438
Number of successful extensions: 25835
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25799
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
