Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019746A_C01 KMC019746A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_082304.1| RIKEN cDNA 2410003H12 [Mus musculus] gi|1284574... 33 2.0
gb|AAH25184.1| Similar to chromosome 20 open reading frame 162 [... 33 2.0
emb|CAD38585.1| hypothetical protein [Homo sapiens] 33 2.6
gb|AAM29455.1| RE33150p [Drosophila melanogaster] 32 3.4
ref|NP_611491.1| CG13424-PA [Drosophila melanogaster] gi|7302366... 32 3.4
>ref|NP_082304.1| RIKEN cDNA 2410003H12 [Mus musculus] gi|12845742|dbj|BAB26878.1|
unnamed protein product [Mus musculus]
gi|29144985|gb|AAH46831.1| RIKEN cDNA 2410003H12 gene
[Mus musculus]
Length = 455
Score = 33.1 bits (74), Expect = 2.0
Identities = 24/65 (36%), Positives = 33/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 285 FHSPTHLIMCCISIRQQSLH-DMITQPSSWTSNRECKGSTVITSSVS-SLASHYIVTLMI 458
FH P I+ +S RQQ L DM+ P+ WTS +++ S S SL H VTL+
Sbjct: 360 FHLPCRHILAMLSARQQVLQPDML--PAQWTSGCASSLDSILGSKWSASLDKHLAVTLLT 417
Query: 459 SNL*R 473
+ R
Sbjct: 418 EEVGR 422
>gb|AAH25184.1| Similar to chromosome 20 open reading frame 162 [Mus musculus]
Length = 358
Score = 33.1 bits (74), Expect = 2.0
Identities = 24/65 (36%), Positives = 33/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 285 FHSPTHLIMCCISIRQQSLH-DMITQPSSWTSNRECKGSTVITSSVS-SLASHYIVTLMI 458
FH P I+ +S RQQ L DM+ P+ WTS +++ S S SL H VTL+
Sbjct: 263 FHLPCRHILAMLSARQQVLQPDML--PAQWTSGCASSLDSILGSKWSASLDKHLAVTLLT 320
Query: 459 SNL*R 473
+ R
Sbjct: 321 EEVGR 325
>emb|CAD38585.1| hypothetical protein [Homo sapiens]
Length = 639
Score = 32.7 bits (73), Expect = 2.6
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +2
Query: 239 LVYFQYKCFLLAQALLSFSHPPHYVLHQYQAAKSTRHDNTA 361
L+ C L+ A+L HPPH+ LHQ A++++H A
Sbjct: 18 LLLLMLGCVLMMVAML---HPPHHTLHQTDTAQASKHSPEA 55
>gb|AAM29455.1| RE33150p [Drosophila melanogaster]
Length = 378
Score = 32.3 bits (72), Expect = 3.4
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = +3
Query: 354 TQPSSWTSNRECKGSTVITSSVSSLASHYIVTLMISNL*R 473
TQ W NR K TS V +LASHY L I L R
Sbjct: 128 TQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLAR 167
>ref|NP_611491.1| CG13424-PA [Drosophila melanogaster] gi|7302366|gb|AAF57455.1|
CG13424-PA [Drosophila melanogaster]
Length = 411
Score = 32.3 bits (72), Expect = 3.4
Identities = 18/40 (45%), Positives = 19/40 (47%)
Frame = +3
Query: 354 TQPSSWTSNRECKGSTVITSSVSSLASHYIVTLMISNL*R 473
TQ W NR K TS V +LASHY L I L R
Sbjct: 161 TQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLAR 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,133,504
Number of Sequences: 1393205
Number of extensions: 9732858
Number of successful extensions: 25436
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25424
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
