Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019743A_C01 KMC019743A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193991.1| hypothetical protein; protein id: At4g22600.1 [... 97 2e-19
dbj|BAA90615.1| hypothetical protein [Oryza sativa (japonica cul... 39 0.032
gb|AAM92294.1| hypothetical protein [Oryza sativa (japonica cult... 37 0.12
ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|2838049... 36 0.35
gb|AAM21005.1|AF467890_1 similar to quaking II [Mus musculus] 36 0.35
>ref|NP_193991.1| hypothetical protein; protein id: At4g22600.1 [Arabidopsis
thaliana] gi|7460211|pir||T05454 hypothetical protein
F7K2.180 - Arabidopsis thaliana
gi|3892715|emb|CAA22165.1| hypothetical protein
[Arabidopsis thaliana] gi|7269106|emb|CAB79215.1|
hypothetical protein [Arabidopsis thaliana]
Length = 273
Score = 96.7 bits (239), Expect = 2e-19
Identities = 52/116 (44%), Positives = 75/116 (63%), Gaps = 9/116 (7%)
Frame = -3
Query: 546 RMDEIECGLRVIVPTLSDRFARAEAGFVHRVVGDW---FQCRESK------GAAKVAVGE 394
R+D+IEC +R++VP L DR + + FV RV W +Q + K A +V E
Sbjct: 148 RIDQIECTMRLMVPGLMDRMRKTQRSFVARVSESWVSSYQVGKKKKLTATVATASTSVDE 207
Query: 393 DVRAHMDEVVSVFLCAHRVRRSVLVDIISAATVYQAALFLEGLAQFLIGFKDHDLL 226
+ M+E+VS+F+ A+R+R+SV++DI+ A + +QAALFLEGL QFL GFKD LL
Sbjct: 208 AAKIEMEELVSIFVDANRLRKSVIMDIVGATSEHQAALFLEGLCQFLAGFKDQILL 263
>dbj|BAA90615.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 254
Score = 39.3 bits (90), Expect = 0.032
Identities = 41/103 (39%), Positives = 47/103 (44%), Gaps = 5/103 (4%)
Frame = +3
Query: 258 TGPALQETTPPGTPSRR**YPPERSAGRGGRRETRSPPHPCEPSRLHPQPP*QRPCSPCT 437
+GPA E P P R P A GG RE P +R P QR SPC
Sbjct: 133 SGPA--ELNGPAGPRR----PKLARAREGGERE---PVDRAHHARSRVGPACQRLGSPCG 183
Query: 438 GTSRRRR--GEQTQPRRA-RSGRRVWGQ*RA--GRTRSRPCGG 551
G++RR R GE T+ RA R GRR G R+ R SR GG
Sbjct: 184 GSTRRTRAGGEGTRCMRAVRGGRRCGGPTRSLTARGGSRARGG 226
>gb|AAM92294.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 343
Score = 37.4 bits (85), Expect = 0.12
Identities = 37/105 (35%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Frame = +3
Query: 273 QETTPPGTPSRR**YPPERSAGRGGRR--ETRSPPHPCEPSRLHPQPP*QRPCSPCTGTS 446
+E PPG + R PP GRG RR T + P P R P PP P P TG
Sbjct: 19 RERRPPG--AWRAPPPPPPPTGRGSRRPAATAAFPPPIRHHRRRPMPP--PPPPPPTGRG 74
Query: 447 RRRR----------GEQTQPRRARSGRRVWGQ*RAGRTRSRPCGG 551
RR G +T PRR +G G+ G R R GG
Sbjct: 75 CRREVARWEGSSPIGPRTGPRRQPTG----GEETDGARRERRFGG 115
>ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|28380492|gb|AAF49349.4|
CG13731-PA [Drosophila melanogaster]
Length = 926
Score = 35.8 bits (81), Expect = 0.35
Identities = 22/61 (36%), Positives = 26/61 (42%)
Frame = +3
Query: 264 PALQETTPPGTPSRR**YPPERSAGRGGRRETRSPPHPCEPSRLHPQPP*QRPCSPCTGT 443
P ++ T PP P+R PP R TR+ P P P P PP RP P T
Sbjct: 523 PTVRTTRPPPPPTRPPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPTPPPTRPPPPPTRA 582
Query: 444 S 446
S
Sbjct: 583 S 583
>gb|AAM21005.1|AF467890_1 similar to quaking II [Mus musculus]
Length = 189
Score = 35.8 bits (81), Expect = 0.35
Identities = 33/101 (32%), Positives = 36/101 (34%), Gaps = 7/101 (6%)
Frame = +3
Query: 267 ALQETTPPGTPSRR**YPPER---SAGRGGRRETRSPPHPCEPSRLHPQPP*QRPCSPCT 437
A Q PG P R PER + G PP P L P PP R
Sbjct: 68 APQAIRRPGFPPREVGAAPERFGPAPPSAGHLRPAPPPRRRAPGPLPPHPPPPRRALRQV 127
Query: 438 GTSRRRRGEQTQPRRAR----SGRRVWGQ*RAGRTRSRPCG 548
G S R+G PRRA S RVW + R S G
Sbjct: 128 GRSDPRKGRGHSPRRAHALSASRLRVWTRDAHPRVPSEATG 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,135,605
Number of Sequences: 1393205
Number of extensions: 12662007
Number of successful extensions: 44001
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 39168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43406
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
