Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019740A_C01 KMC019740A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC99310.1| CONSTANS-like protein 2 [Malus x domestica] 194 4e-49
gb|AAK96601.1| AT5g24930/F6A4_140 [Arabidopsis thaliana] gi|2350... 190 7e-48
ref|NP_197875.1| CONSTANS B-box zinc finger family protein; prot... 190 7e-48
gb|AAC99309.1| CONSTANS-like protein 1 [Malus x domestica] 184 5e-46
pir||T08125 CONSTANS protein homolog COL1 - radish gi|3341723|gb... 170 9e-42
>gb|AAC99310.1| CONSTANS-like protein 2 [Malus x domestica]
Length = 329
Score = 194 bits (494), Expect = 4e-49
Identities = 102/174 (58%), Positives = 119/174 (67%), Gaps = 21/174 (12%)
Frame = +1
Query: 1 SKLCDSCKSATATLYCRPDSAFLCAPCDSKVHAANKLASRHPRVTLCEVCEQAPASLTCK 180
SKLCDSC+SATATL+CR DSAFLC CDSK+HAANKLASRHPRV LCEVCEQAPA +TCK
Sbjct: 3 SKLCDSCQSATATLFCRADSAFLCVNCDSKIHAANKLASRHPRVWLCEVCEQAPAHVTCK 62
Query: 181 ADAANLCLSCDHDIHSANPLAARHERSPVTPFFHS------------PAANFLDHQHLFT 324
AD A LC++CD DIHSANPL++RH+R PVTPF+ S NFLD ++L
Sbjct: 63 ADDAALCVTCDRDIHSANPLSSRHDRVPVTPFYDSVNSAANSVPVVKSVVNFLDDRYL-- 120
Query: 325 DAKPEPEAEAAEEEEEAEAASWLLPTPKEAD---------LFSESDPLHFLDLE 459
+ + E EEAEAASWLLP PK + LF E DP +LDL+
Sbjct: 121 ---SDVDGETEVSREEAEAASWLLPNPKAMENPDLNSGQYLFQEMDP--YLDLD 169
>gb|AAK96601.1| AT5g24930/F6A4_140 [Arabidopsis thaliana]
gi|23505811|gb|AAN28765.1| At5g24930/F6A4_140
[Arabidopsis thaliana]
Length = 232
Score = 190 bits (483), Expect = 7e-48
Identities = 99/146 (67%), Positives = 109/146 (73%), Gaps = 10/146 (6%)
Frame = +1
Query: 1 SKLCDSCKSATATLYCRPDSAFLCAPCDSKVHAANKLASRHPRVTLCEVCEQAPASLTCK 180
SKLCDSCKSATA LYCRPD+AFLC CDSKVHAANKLASRH RV +CEVCEQAPA +TCK
Sbjct: 3 SKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCK 62
Query: 181 ADAANLCLSCDHDIHSANPLAARHERSPVTPFFHS---------PAANFLDHQHLFTDAK 333
ADAA LC++CD DIHSANPLA RHER PVTPF+ S A NFLD + F+D
Sbjct: 63 ADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCY-FSDI- 120
Query: 334 PEPEAEAAEEEEEAEAASW-LLPTPK 408
+ + EEEE EAASW LLP PK
Sbjct: 121 ---DGNGSREEEEEEAASWLLLPNPK 143
>ref|NP_197875.1| CONSTANS B-box zinc finger family protein; protein id: At5g24930.1,
supported by cDNA: gi_15450658 [Arabidopsis thaliana]
Length = 362
Score = 190 bits (483), Expect = 7e-48
Identities = 99/146 (67%), Positives = 109/146 (73%), Gaps = 10/146 (6%)
Frame = +1
Query: 1 SKLCDSCKSATATLYCRPDSAFLCAPCDSKVHAANKLASRHPRVTLCEVCEQAPASLTCK 180
SKLCDSCKSATA LYCRPD+AFLC CDSKVHAANKLASRH RV +CEVCEQAPA +TCK
Sbjct: 3 SKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCK 62
Query: 181 ADAANLCLSCDHDIHSANPLAARHERSPVTPFFHS---------PAANFLDHQHLFTDAK 333
ADAA LC++CD DIHSANPLA RHER PVTPF+ S A NFLD + F+D
Sbjct: 63 ADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCY-FSDI- 120
Query: 334 PEPEAEAAEEEEEAEAASW-LLPTPK 408
+ + EEEE EAASW LLP PK
Sbjct: 121 ---DGNGSREEEEEEAASWLLLPNPK 143
>gb|AAC99309.1| CONSTANS-like protein 1 [Malus x domestica]
Length = 340
Score = 184 bits (467), Expect = 5e-46
Identities = 103/181 (56%), Positives = 118/181 (64%), Gaps = 24/181 (13%)
Frame = +1
Query: 4 KLCDSCKSATATLYCRPDSAFLCAPCDSKVHAANKLASRHPRVTLCEVCEQAPASLTCKA 183
KLCDSCKSAT TL+CR DSAFLC CDSK+HAANKLASRH RV LCEVCEQAPA +TCKA
Sbjct: 4 KLCDSCKSATGTLFCRADSAFLCVNCDSKIHAANKLASRHARVWLCEVCEQAPAHVTCKA 63
Query: 184 DAANLCLSCDHDIHSANPLAARHERSPVTPFFHS------------PAANFLDHQHLFTD 327
D A LC++CD DIHSANPL+ ER PVTPF+ S A NFL+ ++ F+D
Sbjct: 64 DDAALCVTCDRDIHSANPLSHADERVPVTPFYDSVNSATDSVPAVKSAVNFLNDRY-FSD 122
Query: 328 AKPEPEAEAAEEEEEAEAASWLLPTPKEAD---------LFSESDPLHFLD---LEQKIS 471
E EA EEAEAASWLLP PK + LF E DP LD ++ K+
Sbjct: 123 VDGEIEA----RREEAEAASWLLPNPKAMENPDLNSGQYLFPEMDPYMDLDYGHVDPKLE 178
Query: 472 D 474
D
Sbjct: 179 D 179
>pir||T08125 CONSTANS protein homolog COL1 - radish gi|3341723|gb|AAC35496.1|
CONSTANS-like 1 protein [Raphanus sativus]
Length = 307
Score = 170 bits (430), Expect = 9e-42
Identities = 84/166 (50%), Positives = 104/166 (62%)
Frame = +1
Query: 1 SKLCDSCKSATATLYCRPDSAFLCAPCDSKVHAANKLASRHPRVTLCEVCEQAPASLTCK 180
S+LCDSC+SA ATLYCR D+AFLC CD K+H ANKLASRH RV LC++CEQAPA +TC+
Sbjct: 3 SRLCDSCRSAAATLYCRADAAFLCGECDGKIHTANKLASRHERVLLCQICEQAPAHVTCE 62
Query: 181 ADAANLCLSCDHDIHSANPLAARHERSPVTPFFHSPAANFLDHQHLFTDAKPEPEAEAAE 360
ADAA LC++CD DIHSANPL+ RHER VTPF+ +PA T + +
Sbjct: 63 ADAAALCVTCDRDIHSANPLSRRHERVSVTPFYDAPAQG---GSPATTKSAASSNLFGED 119
Query: 361 EEEEAEAASWLLPTPKEADLFSESDPLHFLDLEQKISDCVVPVNSN 498
+ EA SWLLP P + P F DL+ D + + N
Sbjct: 120 ADVSMEAVSWLLPNPSVKEGVVVEIPNLFADLDYSAVDPKMEASEN 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.317 0.129 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,547,747
Number of Sequences: 1393205
Number of extensions: 16253557
Number of successful extensions: 522405
Number of sequences better than 10.0: 18992
Number of HSP's better than 10.0 without gapping: 131417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312173
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
