Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019731A_C01 KMC019731A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566822.1| expressed protein; protein id: At3g27640.1, sup... 54 1e-06
dbj|BAB02688.1| contains similarity to unknown protein~gb|AAF351... 54 1e-06
gb|AAO38457.1| lethal(2)denticleless-like protein [Oryza sativa ... 50 1e-05
pir||A86402 protein T22C5.17 [imported] - Arabidopsis thaliana g... 33 1.7
ref|NP_174093.1| hypothetical protein; protein id: At1g27720.1 [... 33 1.7
>ref|NP_566822.1| expressed protein; protein id: At3g27640.1, supported by cDNA:
gi_14334987, supported by cDNA: gi_17104576 [Arabidopsis
thaliana] gi|14334988|gb|AAK59671.1| unknown protein
[Arabidopsis thaliana] gi|17104577|gb|AAL34177.1|
unknown protein [Arabidopsis thaliana]
Length = 535
Score = 53.9 bits (128), Expect = 1e-06
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = -2
Query: 492 TPITPPEMNTSEGHKNQLSSGLDQTLDSEKTPESALKSPSSVLNPPSSLK-RTIRDYFLA 316
TP + + +S + LSS ++ + E+TPE+ SPSSVLNPPSS+K RTIRDYFL
Sbjct: 476 TPESQKKKTSSSSSLSSLSS--EEDIICERTPETTFNSPSSVLNPPSSVKRRTIRDYFLV 533
Query: 315 S 313
+
Sbjct: 534 T 534
>dbj|BAB02688.1| contains similarity to unknown
protein~gb|AAF35182.1~gene_id:MGF10.5 [Arabidopsis
thaliana]
Length = 566
Score = 53.9 bits (128), Expect = 1e-06
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = -2
Query: 492 TPITPPEMNTSEGHKNQLSSGLDQTLDSEKTPESALKSPSSVLNPPSSLK-RTIRDYFLA 316
TP + + +S + LSS ++ + E+TPE+ SPSSVLNPPSS+K RTIRDYFL
Sbjct: 507 TPESQKKKTSSSSSLSSLSS--EEDIICERTPETTFNSPSSVLNPPSSVKRRTIRDYFLV 564
Query: 315 S 313
+
Sbjct: 565 T 565
>gb|AAO38457.1| lethal(2)denticleless-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 555
Score = 50.4 bits (119), Expect = 1e-05
Identities = 25/40 (62%), Positives = 32/40 (79%), Gaps = 1/40 (2%)
Frame = -2
Query: 426 DQTLDSEKTPESALKSPSSVLNPPSSLK-RTIRDYFLASS 310
+ +LD K+PE+ + SPSSVL+PP SLK RTIRDYF +SS
Sbjct: 481 EDSLDIRKSPEAQMNSPSSVLSPPHSLKRRTIRDYFASSS 520
>pir||A86402 protein T22C5.17 [imported] - Arabidopsis thaliana
gi|6693034|gb|AAF24960.1|AC012375_23 T22C5.17
[Arabidopsis thaliana]
Length = 697
Score = 33.5 bits (75), Expect = 1.7
Identities = 19/55 (34%), Positives = 25/55 (44%)
Frame = -2
Query: 513 HHQTEPATPITPPEMNTSEGHKNQLSSGLDQTLDSEKTPESALKSPSSVLNPPSS 349
H + + T E + E H NQLSS TL+S T + K P + PSS
Sbjct: 150 HDKVSKSAEFTAQESDPREVHVNQLSSTTSGTLNSSTTVQGLNKHPEQHMQLPSS 204
>ref|NP_174093.1| hypothetical protein; protein id: At1g27720.1 [Arabidopsis
thaliana]
Length = 617
Score = 33.5 bits (75), Expect = 1.7
Identities = 19/55 (34%), Positives = 25/55 (44%)
Frame = -2
Query: 513 HHQTEPATPITPPEMNTSEGHKNQLSSGLDQTLDSEKTPESALKSPSSVLNPPSS 349
H + + T E + E H NQLSS TL+S T + K P + PSS
Sbjct: 136 HDKVSKSAEFTAQESDPREVHVNQLSSTTSGTLNSSTTVQGLNKHPEQHMQLPSS 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,460,956
Number of Sequences: 1393205
Number of extensions: 8530114
Number of successful extensions: 23823
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 22972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23774
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
