Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019730A_C01 KMC019730A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172962.1| putative RING-H2 zinc finger protein; protein i... 102 3e-21
ref|NP_565253.1| RING-H2 finger protein RHA2b; protein id: At2g0... 75 6e-13
pir||C84421 probable RING-H2 finger protein RHA2b [imported] - A... 75 6e-13
ref|NP_198956.1| RING zinc finger protein-like; protein id: At5g... 59 3e-08
dbj|BAB01310.1| gene_id:MPN9.20~unknown protein [Arabidopsis tha... 59 3e-08
>ref|NP_172962.1| putative RING-H2 zinc finger protein; protein id: At1g15100.1,
supported by cDNA: 5398., supported by cDNA:
gi_19715569, supported by cDNA: gi_20334913, supported
by cDNA: gi_3790568 [Arabidopsis thaliana]
gi|11358778|pir||T51842 RING-H2 finger protein RHA2a
[imported] - Arabidopsis thaliana
gi|3790569|gb|AAC68671.1| RING-H2 finger protein RHA2a
[Arabidopsis thaliana]
gi|5103808|gb|AAD39638.1|AC007591_3 Identical to
gb|AF078822 RING-H2 finger RHA2a protein from
Arabidopsis thaliana. ESTs gb|N37587, gb|T04684,
gb|AA394318, gb|Z35014 and gb|AA713343 come from this
gene gi|19715570|gb|AAL91611.1| At1g15100/F9L1_3
[Arabidopsis thaliana] gi|20334914|gb|AAM16213.1|
At1g15100/F9L1_3 [Arabidopsis thaliana]
gi|21593875|gb|AAM65842.1| putative RING-H2 zinc finger
protein [Arabidopsis thaliana]
Length = 155
Score = 102 bits (254), Expect = 3e-21
Identities = 42/77 (54%), Positives = 57/77 (73%)
Frame = -1
Query: 535 DGAGERHNCVVCQRTFKDGDQVRRLPCRHTFHRRCFEGWLHHYKFNCPLCRYSLLSDERV 356
DG G +CVVC K+G++VR+L CRH FH++C EGWLH + F CPLCR +L+SD+ V
Sbjct: 78 DGGGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCV 137
Query: 355 ALTEQRVGRQLVSWFSL 305
+ T++ VGR L+S FSL
Sbjct: 138 SKTQRSVGRDLISCFSL 154
>ref|NP_565253.1| RING-H2 finger protein RHA2b; protein id: At2g01150.1, supported by
cDNA: gi_3790570 [Arabidopsis thaliana]
gi|11358779|pir||T51843 RING-H2 finger protein RHA2b
[imported] - Arabidopsis thaliana
gi|3790571|gb|AAC68672.1| RING-H2 finger protein RHA2b
[Arabidopsis thaliana] gi|20197589|gb|AAD14516.2|
RING-H2 finger protein RHA2b [Arabidopsis thaliana]
Length = 147
Score = 74.7 bits (182), Expect = 6e-13
Identities = 28/48 (58%), Positives = 35/48 (72%)
Frame = -1
Query: 514 NCVVCQRTFKDGDQVRRLPCRHTFHRRCFEGWLHHYKFNCPLCRYSLL 371
+C+VC K G++VR+L CRH FH++C EGWL H FNCPLCR LL
Sbjct: 73 DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120
>pir||C84421 probable RING-H2 finger protein RHA2b [imported] - Arabidopsis
thaliana
Length = 173
Score = 74.7 bits (182), Expect = 6e-13
Identities = 28/48 (58%), Positives = 35/48 (72%)
Frame = -1
Query: 514 NCVVCQRTFKDGDQVRRLPCRHTFHRRCFEGWLHHYKFNCPLCRYSLL 371
+C+VC K G++VR+L CRH FH++C EGWL H FNCPLCR LL
Sbjct: 99 DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 146
>ref|NP_198956.1| RING zinc finger protein-like; protein id: At5g41400.1, supported
by cDNA: 207148. [Arabidopsis thaliana]
gi|9758049|dbj|BAB08512.1| RING zinc finger protein-like
[Arabidopsis thaliana] gi|27754689|gb|AAO22788.1|
putative RING zinc finger protein [Arabidopsis thaliana]
gi|28394017|gb|AAO42416.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 176
Score = 59.3 bits (142), Expect = 3e-08
Identities = 27/61 (44%), Positives = 36/61 (58%), Gaps = 2/61 (3%)
Frame = -1
Query: 511 CVVCQRTFKDGDQVRRLP-CRHTFHRRCFEGWLHHY-KFNCPLCRYSLLSDERVALTEQR 338
C VC F++ D++RRL C+H FHR C + W+ Y + CPLCR +SDE QR
Sbjct: 105 CAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDELQVAFNQR 164
Query: 337 V 335
V
Sbjct: 165 V 165
>dbj|BAB01310.1| gene_id:MPN9.20~unknown protein [Arabidopsis thaliana]
Length = 386
Score = 59.3 bits (142), Expect = 3e-08
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = -1
Query: 523 ERHNCVVCQRTFKDGDQVRRLPCRHTFHRRCFEGWLHHYKFNCPLCRYSLLSDE 362
E + C VC F+DG V+++PC+H FH+ C WL + +CP+CR+ L +D+
Sbjct: 270 EMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHN-SCPVCRFELPTDD 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,568,594
Number of Sequences: 1393205
Number of extensions: 10360755
Number of successful extensions: 42685
Number of sequences better than 10.0: 1183
Number of HSP's better than 10.0 without gapping: 37635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41916
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
