Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019722A_C01 KMC019722A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196073.1| fatty acid elongase - like protein; protein id:... 87 1e-16
gb|AAG16863.1|AC069145_12 putative fatty acid elongase [Oryza sa... 80 8e-15
ref|NP_180431.1| putative fatty acid elongase; protein id: At2g2... 80 1e-14
gb|AAM61290.1| putative fatty acid elongase [Arabidopsis thaliana] 80 1e-14
ref|NP_172251.1| fatty acid elongase 3-ketoacyl-CoA synthase, pu... 77 7e-14
>ref|NP_196073.1| fatty acid elongase - like protein; protein id: At5g04530.1
[Arabidopsis thaliana] gi|11357291|pir||T48449 fatty
acid elongase-like protein - Arabidopsis thaliana
gi|7406457|emb|CAB85559.1| fatty acid elongase-like
protein [Arabidopsis thaliana]
gi|26449447|dbj|BAC41850.1| putative fatty acid elongase
[Arabidopsis thaliana] gi|28951053|gb|AAO63450.1|
At5g04530 [Arabidopsis thaliana]
Length = 464
Score = 86.7 bits (213), Expect = 1e-16
Identities = 35/64 (54%), Positives = 52/64 (80%), Gaps = 1/64 (1%)
Frame = -2
Query: 467 ILMISLGTGFKCHHCVWEVMRDLSDANVWKDCIDSYPP-NTLNNPFKEKYNWLNDEFLNF 291
ILM+S+G GF+ ++CVWEV++DL D NVW+D +D YP + + NPF EKY+W+ND+ ++F
Sbjct: 401 ILMMSMGAGFESNNCVWEVLKDLDDKNVWEDSVDRYPELSRIPNPFVEKYDWINDDTMSF 460
Query: 290 VRLD 279
VR+D
Sbjct: 461 VRVD 464
>gb|AAG16863.1|AC069145_12 putative fatty acid elongase [Oryza sativa]
gi|16905155|gb|AAL31025.1|AC078948_9 putative fatty acid
elongase 3-ketoacyl-CoA synthase [Oryza sativa]
Length = 465
Score = 80.5 bits (197), Expect = 8e-15
Identities = 32/54 (59%), Positives = 40/54 (73%)
Frame = -2
Query: 467 ILMISLGTGFKCHHCVWEVMRDLSDANVWKDCIDSYPPNTLNNPFKEKYNWLND 306
+LM++ G GFKC+ CVW V + +SDA VWKDCID YPP L NPF EKY ++ D
Sbjct: 408 VLMLTFGAGFKCNSCVWTVEKPVSDAGVWKDCIDHYPPKELANPFMEKYGFVKD 461
>ref|NP_180431.1| putative fatty acid elongase; protein id: At2g28630.1, supported by
cDNA: 115769., supported by cDNA: gi_15810262, supported
by cDNA: gi_20259582 [Arabidopsis thaliana]
gi|25408004|pir||C84687 probable fatty acid elongase
[imported] - Arabidopsis thaliana
gi|4580394|gb|AAD24372.1| putative fatty acid elongase
[Arabidopsis thaliana] gi|15810263|gb|AAL07019.1|
putative fatty acid elongase [Arabidopsis thaliana]
gi|20259583|gb|AAM14134.1| putative fatty acid elongase
[Arabidopsis thaliana]
Length = 476
Score = 80.1 bits (196), Expect = 1e-14
Identities = 33/59 (55%), Positives = 41/59 (68%), Gaps = 4/59 (6%)
Frame = -2
Query: 467 ILMISLGTGFKCHHCVWEVMRDL----SDANVWKDCIDSYPPNTLNNPFKEKYNWLNDE 303
+ MIS G GFKC+ CVWEV+RDL S NVW CID YPP ++ NP+ EK+ W+ DE
Sbjct: 406 VFMISFGAGFKCNSCVWEVVRDLTGGESKGNVWNHCIDDYPPKSILNPYLEKFGWIQDE 464
>gb|AAM61290.1| putative fatty acid elongase [Arabidopsis thaliana]
Length = 476
Score = 80.1 bits (196), Expect = 1e-14
Identities = 33/59 (55%), Positives = 41/59 (68%), Gaps = 4/59 (6%)
Frame = -2
Query: 467 ILMISLGTGFKCHHCVWEVMRDL----SDANVWKDCIDSYPPNTLNNPFKEKYNWLNDE 303
+ MIS G GFKC+ CVWEV+RDL S NVW CID YPP ++ NP+ EK+ W+ DE
Sbjct: 406 VFMISFGAGFKCNSCVWEVVRDLTGGESKGNVWNHCIDDYPPKSILNPYLEKFGWIQDE 464
>ref|NP_172251.1| fatty acid elongase 3-ketoacyl-CoA synthase, putative; protein id:
At1g07720.1, supported by cDNA: gi_16226846, supported
by cDNA: gi_17065247 [Arabidopsis thaliana]
gi|25407000|pir||D86212 hypothetical protein [imported]
- Arabidopsis thaliana
gi|8439896|gb|AAF75082.1|AC007583_18 Contains similarity
to fatty acid elongase 3-ketoacyl-CoA synthase 1 from
Arabidopsis thaliana gb|AF053345. It contains chalcone
and stilbene synthases domain PF|00195
gi|16226847|gb|AAL16279.1|AF428349_1 At1g07720/F24B9_16
[Arabidopsis thaliana] gi|17065248|gb|AAL32778.1|
Unknown protein [Arabidopsis thaliana]
gi|22136232|gb|AAM91194.1| unknown protein [Arabidopsis
thaliana]
Length = 478
Score = 77.4 bits (189), Expect = 7e-14
Identities = 32/59 (54%), Positives = 42/59 (70%), Gaps = 4/59 (6%)
Frame = -2
Query: 467 ILMISLGTGFKCHHCVWEVMRDLSDA----NVWKDCIDSYPPNTLNNPFKEKYNWLNDE 303
+ MIS G GFKC+ CVWEV+RDL+ NVW CI+ YPP ++ NPF EKY W+++E
Sbjct: 407 VFMISFGAGFKCNSCVWEVVRDLNVGEAVGNVWNHCINQYPPKSILNPFFEKYGWIHEE 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,249,029
Number of Sequences: 1393205
Number of extensions: 8517720
Number of successful extensions: 22468
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 21763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22425
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
