Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019659A_C01 KMC019659A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568611.1| putative protein; protein id: At5g42760.1, supp... 156 2e-37
dbj|BAB10632.1| gene_id:MJB21.14~pir||F70811~similar to unknown ... 156 2e-37
gb|AAN65019.1| hypothetical protein [Oryza sativa (japonica cult... 140 1e-32
emb|CAC18801.1| neurobeachin [Gallus gallus] 37 0.23
ref|NP_579080.1| threonyl-tRNA synthetase [Pyrococcus furiosus D... 34 1.5
>ref|NP_568611.1| putative protein; protein id: At5g42760.1, supported by cDNA:
111265., supported by cDNA: gi_16648882 [Arabidopsis
thaliana] gi|16648883|gb|AAL24293.1| Unknown protein
[Arabidopsis thaliana] gi|21536783|gb|AAM61115.1|
unknown [Arabidopsis thaliana]
Length = 344
Score = 156 bits (394), Expect = 2e-37
Identities = 72/94 (76%), Positives = 80/94 (84%)
Frame = -2
Query: 575 VLIADFMNKPSTTLSNSAFQFYSDWPDHLLPSMGFPHVKLSQIGDPDAHFGLLNDPLNLF 396
VL+ADFMNKPS TL NS F FYSDWPD LLP++GF HVKLSQIGDPDA+FGLL+DP NLF
Sbjct: 245 VLLADFMNKPSATLPNSVFHFYSDWPDQLLPTLGFSHVKLSQIGDPDANFGLLHDPRNLF 304
Query: 395 DKLRGLPRSLHTNPDDGTPCCRLYLVEASGSPDQ 294
+KL LPR+ +PDDG PCCRLYLVEASGSP Q
Sbjct: 305 NKLLRLPRTAQIHPDDGKPCCRLYLVEASGSPPQ 338
>dbj|BAB10632.1| gene_id:MJB21.14~pir||F70811~similar to unknown protein
[Arabidopsis thaliana]
Length = 370
Score = 156 bits (394), Expect = 2e-37
Identities = 72/94 (76%), Positives = 80/94 (84%)
Frame = -2
Query: 575 VLIADFMNKPSTTLSNSAFQFYSDWPDHLLPSMGFPHVKLSQIGDPDAHFGLLNDPLNLF 396
VL+ADFMNKPS TL NS F FYSDWPD LLP++GF HVKLSQIGDPDA+FGLL+DP NLF
Sbjct: 271 VLLADFMNKPSATLPNSVFHFYSDWPDQLLPTLGFSHVKLSQIGDPDANFGLLHDPRNLF 330
Query: 395 DKLRGLPRSLHTNPDDGTPCCRLYLVEASGSPDQ 294
+KL LPR+ +PDDG PCCRLYLVEASGSP Q
Sbjct: 331 NKLLRLPRTAQIHPDDGKPCCRLYLVEASGSPPQ 364
>gb|AAN65019.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 345
Score = 140 bits (352), Expect = 1e-32
Identities = 67/100 (67%), Positives = 78/100 (78%)
Frame = -2
Query: 575 VLIADFMNKPSTTLSNSAFQFYSDWPDHLLPSMGFPHVKLSQIGDPDAHFGLLNDPLNLF 396
VL+ADFMNK + +LS + + FY D PD LLPS+GF V LSQIGDP AHFGLL+ P NLF
Sbjct: 245 VLLADFMNKNAVSLSRAMYHFYHDSPDLLLPSIGFSQVTLSQIGDPQAHFGLLSHPQNLF 304
Query: 395 DKLRGLPRSLHTNPDDGTPCCRLYLVEASGSPDQRDGHKG 276
DKLR LPRS+ TNP+DGTPCCRLYLVEAS PD + +G
Sbjct: 305 DKLRRLPRSVETNPEDGTPCCRLYLVEASAFPDDQITKQG 344
>emb|CAC18801.1| neurobeachin [Gallus gallus]
Length = 793
Score = 36.6 bits (83), Expect = 0.23
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -2
Query: 575 VLIADFMNKPSTTLSNSAFQFYSDWPDHLLPSMGFPHVKLSQIGDPDAHFGLLNDPLNLF 396
+ +AD ++PST ++ F + LLP + H+ + + D H G +ND L L
Sbjct: 227 ITLADEKDEPSTNSTSFLFDKIPSQEEKLLPDLSISHISIPNVQDTQMHLG-VNDDLGLL 285
Query: 395 DKLRG 381
+ G
Sbjct: 286 AHMTG 290
>ref|NP_579080.1| threonyl-tRNA synthetase [Pyrococcus furiosus DSM 3638]
gi|22654114|sp|Q8U176|SYT_PYRFU Threonyl-tRNA synthetase
(Threonine--tRNA ligase) (ThrRS)
gi|18893458|gb|AAL81475.1| threonyl-tRNA synthetase
[Pyrococcus furiosus DSM 3638]
Length = 625
Score = 33.9 bits (76), Expect = 1.5
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 69 MYE*QHMGMGQLLLRQFPFQRYVISDNQKKYYNLLAIILRYNQWRCIKDKTTSRGELETR 248
MY+ +H + + L R FP ++Y++ K+Y+ L + Q+ KD T S L R
Sbjct: 262 MYDFEHPALEKYLNR-FPARQYIVLSGDKRYF--LRFAACFGQFMISKDATISYRNLPLR 318
Query: 249 MY 254
MY
Sbjct: 319 MY 320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,888,864
Number of Sequences: 1393205
Number of extensions: 12372311
Number of successful extensions: 28005
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 27310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27995
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
