Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019636A_C01 KMC019636A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174304.1| pyruvate dehydrogenase E1 beta subunit, putativ... 201 5e-51
gb|AAB86804.1| pyruvate dehydrogenase E1 beta subunit [Arabidops... 201 5e-51
ref|NP_181006.1| putative pyruvate dehydrogenase E1 beta subunit... 199 3e-50
gb|AAM65328.1| putative pyruvate dehydrogenase E1 beta subunit [... 199 3e-50
gb|AAD22077.1| pyruvate dehydrogenase E1 beta subunit [Pinus ban... 191 7e-48
>ref|NP_174304.1| pyruvate dehydrogenase E1 beta subunit, putative; protein id:
At1g30120.1, supported by cDNA: 38062., supported by
cDNA: gi_13605514, supported by cDNA: gi_20334775,
supported by cDNA: gi_2454183 [Arabidopsis thaliana]
gi|25284456|pir||C86425 probable pyruvate dehydrogenase
E1 beta subunit - Arabidopsis thaliana
gi|12321636|gb|AAG50862.1|AC074176_11 pyruvate
dehydrogenase E1 beta subunit, putative [Arabidopsis
thaliana] gi|13605515|gb|AAK32751.1|AF361583_1
At1g30120/T2H7_8 [Arabidopsis thaliana]
gi|20334776|gb|AAM16249.1| At1g30120/T2H7_8 [Arabidopsis
thaliana]
Length = 406
Score = 201 bits (512), Expect = 5e-51
Identities = 98/103 (95%), Positives = 100/103 (96%)
Frame = -2
Query: 635 TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFN 456
TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAI ENF+
Sbjct: 304 TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFH 363
Query: 455 DYLDAPVVCLSSQDVPTPYTGPLEEWTVVQPAQIVTAVEQLCQ 327
DYLDAPV+CLSSQDVPTPY G LEEWTVVQPAQIVTAVEQLCQ
Sbjct: 364 DYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 406
>gb|AAB86804.1| pyruvate dehydrogenase E1 beta subunit [Arabidopsis thaliana]
gi|21593321|gb|AAM65270.1| pyruvate dehydrogenase E1
beta subunit, putative [Arabidopsis thaliana]
Length = 406
Score = 201 bits (512), Expect = 5e-51
Identities = 98/103 (95%), Positives = 100/103 (96%)
Frame = -2
Query: 635 TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFN 456
TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAI ENF+
Sbjct: 304 TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFH 363
Query: 455 DYLDAPVVCLSSQDVPTPYTGPLEEWTVVQPAQIVTAVEQLCQ 327
DYLDAPV+CLSSQDVPTPY G LEEWTVVQPAQIVTAVEQLCQ
Sbjct: 364 DYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 406
>ref|NP_181006.1| putative pyruvate dehydrogenase E1 beta subunit; protein id:
At2g34590.1, supported by cDNA: 38439., supported by
cDNA: gi_5702374 [Arabidopsis thaliana]
gi|25284457|pir||E84758 probable pyruvate dehydrogenase
E1 beta subunit [imported] - Arabidopsis thaliana
gi|3128205|gb|AAC26685.1| putative pyruvate
dehydrogenase E1 beta subunit [Arabidopsis thaliana]
gi|5702375|gb|AAD47282.1|AF167983_1 putative pyruvate
dehydrogenase beta subunit [Arabidopsis thaliana]
Length = 406
Score = 199 bits (506), Expect = 3e-50
Identities = 97/103 (94%), Positives = 100/103 (96%)
Frame = -2
Query: 635 TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFN 456
TLVNKGYDPEVIDIRSLKPFDL+TIGNSVKKTHRVLIVEECMRTGGIGASLTAAI ENF+
Sbjct: 304 TLVNKGYDPEVIDIRSLKPFDLYTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFH 363
Query: 455 DYLDAPVVCLSSQDVPTPYTGPLEEWTVVQPAQIVTAVEQLCQ 327
DYLDAPV+CLSSQDVPTPY G LEEWTVVQPAQIVTAVEQLCQ
Sbjct: 364 DYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 406
>gb|AAM65328.1| putative pyruvate dehydrogenase E1 beta subunit [Arabidopsis
thaliana]
Length = 406
Score = 199 bits (506), Expect = 3e-50
Identities = 97/103 (94%), Positives = 100/103 (96%)
Frame = -2
Query: 635 TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFN 456
TLVNKGYDPEVIDIRSLKPFDL+TIGNSVKKTHRVLIVEECMRTGGIGASLTAAI ENF+
Sbjct: 304 TLVNKGYDPEVIDIRSLKPFDLYTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFH 363
Query: 455 DYLDAPVVCLSSQDVPTPYTGPLEEWTVVQPAQIVTAVEQLCQ 327
DYLDAPV+CLSSQDVPTPY G LEEWTVVQPAQIVTAVEQLCQ
Sbjct: 364 DYLDAPVMCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 406
>gb|AAD22077.1| pyruvate dehydrogenase E1 beta subunit [Pinus banksiana]
Length = 110
Score = 191 bits (485), Expect = 7e-48
Identities = 91/103 (88%), Positives = 97/103 (93%)
Frame = -2
Query: 635 TLVNKGYDPEVIDIRSLKPFDLHTIGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFN 456
TLVNKGYDPE+IDIRSLKPFDLHTIGNS+KKTHRVLIVEECMRTGGIGASL AAI ENF
Sbjct: 8 TLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFW 67
Query: 455 DYLDAPVVCLSSQDVPTPYTGPLEEWTVVQPAQIVTAVEQLCQ 327
DYLDAP++CLSSQDVPTPY G LE+WTVVQP QIV+AVEQLCQ
Sbjct: 68 DYLDAPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,072,022
Number of Sequences: 1393205
Number of extensions: 11830155
Number of successful extensions: 30144
Number of sequences better than 10.0: 324
Number of HSP's better than 10.0 without gapping: 29087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30077
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
