Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019632A_C01 KMC019632A_c01
(688 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_727772.1| narrow abdomen CG1517-PB gi|22832728|gb|AAF4836... 40 0.039
ref|NP_727773.1| narrow abdomen CG1517-PC gi|22832729|gb|AAN0958... 40 0.039
ref|NP_741698.1| Putative nuclear protein, nematode specific (80... 39 0.051
gb|AAB02354.1| stripe b protein 38 0.11
pir||S69205 stripe a/b protein - fruit fly (Drosophila melanogas... 38 0.11
>ref|NP_727772.1| narrow abdomen CG1517-PB gi|22832728|gb|AAF48365.2| CG1517-PB
[Drosophila melanogaster]
Length = 2196
Score = 39.7 bits (91), Expect = 0.039
Identities = 26/84 (30%), Positives = 35/84 (40%), Gaps = 9/84 (10%)
Frame = -1
Query: 667 GSGNNNMNHHEGHLNMLAGL---------SAYNRSVSESQQQQQPSGSQQSPRGGSHDER 515
GSG ++ +HH H +G+ S+ S++ QQQQQ QS G H
Sbjct: 72 GSGGHHQHHHHSHPYSTSGINTPATASTSSSSGNSLTPQQQQQQQHPHHQS-HHGHHYAH 130
Query: 514 HDNSTSHHS*KKKHQSCSSFHPPP 443
H T HH+ H HP P
Sbjct: 131 HQQHTHHHAPPHSHHP----HPHP 150
>ref|NP_727773.1| narrow abdomen CG1517-PC gi|22832729|gb|AAN09585.1| CG1517-PC
[Drosophila melanogaster]
Length = 2148
Score = 39.7 bits (91), Expect = 0.039
Identities = 26/84 (30%), Positives = 35/84 (40%), Gaps = 9/84 (10%)
Frame = -1
Query: 667 GSGNNNMNHHEGHLNMLAGL---------SAYNRSVSESQQQQQPSGSQQSPRGGSHDER 515
GSG ++ +HH H +G+ S+ S++ QQQQQ QS G H
Sbjct: 72 GSGGHHQHHHHSHPYSTSGINTPATASTSSSSGNSLTPQQQQQQQHPHHQS-HHGHHYAH 130
Query: 514 HDNSTSHHS*KKKHQSCSSFHPPP 443
H T HH+ H HP P
Sbjct: 131 HQQHTHHHAPPHSHHP----HPHP 150
>ref|NP_741698.1| Putative nuclear protein, nematode specific (80.3 kD)
[Caenorhabditis elegans] gi|11359776|pir||T45059
hypothetical protein Y39B6B.gg [imported] -
Caenorhabditis elegans gi|15209353|emb|CAC51077.1|
Hypothetical protein Y39B6A.1 [Caenorhabditis elegans]
Length = 735
Score = 39.3 bits (90), Expect = 0.051
Identities = 25/86 (29%), Positives = 36/86 (41%)
Frame = -1
Query: 661 GNNNMNHHEGHLNMLAGLSAYNRSVSESQQQQQPSGSQQSPRGGSHDERHDNSTSHHS*K 482
G++ ++HH H+ S+ + S S S S S S S DE+H +
Sbjct: 91 GHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHL 150
Query: 481 KKHQSCSSFHPPPPAS*SSSSCLCSS 404
KKH + +S SSSS SS
Sbjct: 151 KKHHKKAESSSSSSSSSSSSSSSSSS 176
Score = 32.3 bits (72), Expect = 6.3
Identities = 23/80 (28%), Positives = 34/80 (41%)
Frame = -1
Query: 658 NNNMNHHEGHLNMLAGLSAYNRSVSESQQQQQPSGSQQSPRGGSHDERHDNSTSHHS*KK 479
+++ H + HL + + S S S S S S S DE+H + H+ KK
Sbjct: 187 HHHKKHAKKHLKKHHKKAESSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKK--HAVKK 244
Query: 478 KHQSCSSFHPPPPAS*SSSS 419
H+ S +S SSSS
Sbjct: 245 HHKKAESSSSSSSSSSSSSS 264
>gb|AAB02354.1| stripe b protein
Length = 906
Score = 38.1 bits (87), Expect = 0.11
Identities = 21/64 (32%), Positives = 28/64 (42%)
Frame = -1
Query: 682 QQQQMGSGNNNMNHHEGHLNMLAGLSAYNRSVSESQQQQQPSGSQQSPRGGSHDERHDNS 503
QQQQ G +++ +HH H + L L + QQQQQ QQ P +H
Sbjct: 358 QQQQFGYHHHHHHHHHHHHSQLQQLQ------QQQQQQQQQQQHQQQPLHQQQQLQHQQQ 411
Query: 502 TSHH 491
HH
Sbjct: 412 QQHH 415
Score = 32.7 bits (73), Expect = 4.8
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -1
Query: 685 QQQQQMGSGN---NNMNHHEGHLNMLAGLSAYNRSVSESQQQQQPSGSQQSPRGGSHDER 515
QQQQQ+ N +N N H H + S S QQ QQ Q + G H
Sbjct: 310 QQQQQLQHNNTSSSNSNCHHSHQQQQQQQQQQHMS-SPQQQYQQHQILHQQQQFGYHHHH 368
Query: 514 HDNSTSHHS 488
H + HHS
Sbjct: 369 HHHHHHHHS 377
>pir||S69205 stripe a/b protein - fruit fly (Drosophila melanogaster)
gi|1147789|gb|AAB02355.1| stripe a protein
Length = 1180
Score = 38.1 bits (87), Expect = 0.11
Identities = 21/64 (32%), Positives = 28/64 (42%)
Frame = -1
Query: 682 QQQQMGSGNNNMNHHEGHLNMLAGLSAYNRSVSESQQQQQPSGSQQSPRGGSHDERHDNS 503
QQQQ G +++ +HH H + L L + QQQQQ QQ P +H
Sbjct: 632 QQQQFGYHHHHHHHHHHHHSQLQQLQ------QQQQQQQQQQQHQQQPLHQQQQLQHQQQ 685
Query: 502 TSHH 491
HH
Sbjct: 686 QQHH 689
Score = 32.7 bits (73), Expect = 4.8
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -1
Query: 685 QQQQQMGSGN---NNMNHHEGHLNMLAGLSAYNRSVSESQQQQQPSGSQQSPRGGSHDER 515
QQQQQ+ N +N N H H + S S QQ QQ Q + G H
Sbjct: 584 QQQQQLQHNNTSSSNSNCHHSHQQQQQQQQQQHMS-SPQQQYQQHQILHQQQQFGYHHHH 642
Query: 514 HDNSTSHHS 488
H + HHS
Sbjct: 643 HHHHHHHHS 651
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,528,300
Number of Sequences: 1393205
Number of extensions: 13878644
Number of successful extensions: 55808
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 48463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54454
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
