Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019624A_C01 KMC019624A_c01
(415 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564388.1| expressed protein; protein id: At1g32080.1, sup... 155 1e-37
gb|AAM65181.1| unknown [Arabidopsis thaliana] 155 1e-37
dbj|BAB60914.1| OSJNBa0054L14.7 [Oryza sativa (japonica cultivar... 137 4e-32
gb|AAG46171.1|AC018727_23 unknown protein [Oryza sativa] 99 9e-21
ref|NP_700787.1| asparagine-rich antigen [Plasmodium falciparum ... 34 0.38
>ref|NP_564388.1| expressed protein; protein id: At1g32080.1, supported by cDNA:
37302., supported by cDNA: gi_14532511, supported by
cDNA: gi_20855883 [Arabidopsis thaliana]
gi|25403144|pir||B86445 unknown protein [imported] -
Arabidopsis thaliana
gi|10801363|gb|AAG23435.1|AC084165_1 unknown protein
[Arabidopsis thaliana]
gi|12321470|gb|AAG50795.1|AC074309_12 unknown protein
[Arabidopsis thaliana] gi|14532512|gb|AAK63984.1|
At1g32080/F3C3_12 [Arabidopsis thaliana]
gi|20855884|gb|AAM26636.1| At1g32080/F3C3_12
[Arabidopsis thaliana]
Length = 512
Score = 155 bits (392), Expect = 1e-37
Identities = 80/117 (68%), Positives = 95/117 (80%), Gaps = 2/117 (1%)
Frame = +2
Query: 71 FLQMGSQGNCQ-SRDISTNSA-GSETGSTSSLTQSVFGLSHLIVSLGLIIAMDKFLKQAF 244
FLQMGS R +S + G+ TG+TS+++++V +SHL+VSLG+I+A D FLKQAF
Sbjct: 58 FLQMGSSKEMNFERKLSVQAMDGAGTGNTSTISRNVIAISHLLVSLGIILAADYFLKQAF 117
Query: 245 VAAAIKFPSALFGMFCIFSVLIILDSTVPAAAKALMNFFEPALLFIQRWLPLFYVPS 415
VAA+IKFPSALFGMFCIFSVL+I DS VPAAA LMNFFEPA LFIQRWLPLFYVPS
Sbjct: 118 VAASIKFPSALFGMFCIFSVLMIFDSVVPAAANGLMNFFEPAFLFIQRWLPLFYVPS 174
>gb|AAM65181.1| unknown [Arabidopsis thaliana]
Length = 512
Score = 155 bits (392), Expect = 1e-37
Identities = 80/117 (68%), Positives = 95/117 (80%), Gaps = 2/117 (1%)
Frame = +2
Query: 71 FLQMGSQGNCQ-SRDISTNSA-GSETGSTSSLTQSVFGLSHLIVSLGLIIAMDKFLKQAF 244
FLQMGS R +S + G+ TG+TS+++++V +SHL+VSLG+I+A D FLKQAF
Sbjct: 58 FLQMGSSKEMNFERKLSVQAMDGAGTGNTSTISRNVIAISHLLVSLGIILAADYFLKQAF 117
Query: 245 VAAAIKFPSALFGMFCIFSVLIILDSTVPAAAKALMNFFEPALLFIQRWLPLFYVPS 415
VAA+IKFPSALFGMFCIFSVL+I DS VPAAA LMNFFEPA LFIQRWLPLFYVPS
Sbjct: 118 VAASIKFPSALFGMFCIFSVLMIFDSVVPAAANGLMNFFEPAFLFIQRWLPLFYVPS 174
>dbj|BAB60914.1| OSJNBa0054L14.7 [Oryza sativa (japonica cultivar-group)]
gi|20804504|dbj|BAB92199.1| P0520B06.24 [Oryza sativa
(japonica cultivar-group)]
Length = 520
Score = 137 bits (344), Expect = 4e-32
Identities = 66/101 (65%), Positives = 81/101 (79%), Gaps = 1/101 (0%)
Frame = +2
Query: 116 STNSAGSETGSTS-SLTQSVFGLSHLIVSLGLIIAMDKFLKQAFVAAAIKFPSALFGMFC 292
+ G G+TS S S+ G++HL+VSLG+++A DKFLKQAF AA+IKFPSALFGMFC
Sbjct: 81 AAGGGGGGAGATSPSGLPSLVGIAHLLVSLGIVLASDKFLKQAFAAASIKFPSALFGMFC 140
Query: 293 IFSVLIILDSTVPAAAKALMNFFEPALLFIQRWLPLFYVPS 415
+FSVL++LD+ PA AK M+FFEPA LFIQRWLPLFYVPS
Sbjct: 141 VFSVLVVLDAFAPALAKGFMDFFEPATLFIQRWLPLFYVPS 181
>gb|AAG46171.1|AC018727_23 unknown protein [Oryza sativa]
Length = 458
Score = 99.4 bits (246), Expect = 9e-21
Identities = 46/82 (56%), Positives = 63/82 (76%)
Frame = +2
Query: 170 VFGLSHLIVSLGLIIAMDKFLKQAFVAAAIKFPSALFGMFCIFSVLIILDSTVPAAAKAL 349
V ++ L+VSLG+++A DK ++QAF AA+IKFPSALF MFC+F++L+ L P+ A
Sbjct: 30 VRNMAQLVVSLGILVAADKLVEQAFAAASIKFPSALFAMFCVFALLLFLP---PSLANGF 86
Query: 350 MNFFEPALLFIQRWLPLFYVPS 415
M FF+PA +FI RWLPLF+VPS
Sbjct: 87 MAFFDPATVFIHRWLPLFFVPS 108
>ref|NP_700787.1| asparagine-rich antigen [Plasmodium falciparum 3D7]
gi|23495181|gb|AAN35511.1|AE014834_8 asparagine-rich
antigen [Plasmodium falciparum 3D7]
Length = 1190
Score = 34.3 bits (77), Expect = 0.38
Identities = 21/78 (26%), Positives = 40/78 (50%), Gaps = 2/78 (2%)
Frame = -2
Query: 414 DGT*NKGSHLCMNSKAGSKKFINALAAAGTVESRI--IKTENIQNIPNNALGNLMAAATN 241
D N GSH +NSK G + ++ L + V++++ K +N + NN++ N + ++ N
Sbjct: 797 DNNKNNGSHNEINSKKGGEAIMSLLGLSKNVDTKLEDDKKKNKKKKKNNSMNNSVLSSNN 856
Query: 240 ACFKNLSIAIISPRDTIK 187
+N+ I + IK
Sbjct: 857 NMIENVDNMIKNNDSIIK 874
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,970,640
Number of Sequences: 1393205
Number of extensions: 7197385
Number of successful extensions: 17126
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 16715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17123
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
