Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019599A_C01 KMC019599A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564018.1| oligouridylate binding protein (UBP1), putative... 369 e-101
emb|CAB75429.1| oligouridylate binding protein [Nicotiana plumba... 355 3e-97
ref|NP_188026.1| oligouridylate binding protein (UBP1), putative... 352 2e-96
gb|AAM65229.1| oligouridylate binding protein, putative [Arabido... 352 2e-96
ref|NP_175810.1| oligouridylate binding protein (UBP1), putative... 342 4e-93
>ref|NP_564018.1| oligouridylate binding protein (UBP1), putative; protein id:
At1g17370.1, supported by cDNA: 17210. [Arabidopsis
thaliana] gi|9665134|gb|AAF97318.1|AC007843_21 Putative
RNA binding protein [Arabidopsis thaliana]
gi|21553830|gb|AAM62923.1| oligouridylate binding
protein, putative [Arabidopsis thaliana]
Length = 419
Score = 369 bits (947), Expect = e-101
Identities = 175/200 (87%), Positives = 188/200 (93%)
Frame = +3
Query: 93 MQNHRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGN 272
MQ + +QQQQQ +MQQAL+QQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGN
Sbjct: 1 MQRLKQQQQQQQVMMQQALMQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGN 60
Query: 273 IHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQP 452
IH QVTE LLQEVFAGTGPVE CKL RKEKSSYGF+HYFDRRSA LAIL+LNGRHLFGQP
Sbjct: 61 IHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQP 120
Query: 453 IKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSR 632
IKVNWAYASGQREDTS H+NIFVGDLSPEVTDA LF CFSVYP+CSDARVMWDQKTGRSR
Sbjct: 121 IKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSR 180
Query: 633 GFGFVSFRSQQDAQSAINDL 692
GFGFVSFR+QQDAQ+AI+++
Sbjct: 181 GFGFVSFRNQQDAQTAIDEI 200
Score = 51.2 bits (121), Expect = 1e-05
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Frame = +3
Query: 237 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 404
D S+ +++VG++ +VT+ +L F+ ++ +K+ +GF+ + +++ A
Sbjct: 134 DTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDA 193
Query: 405 ALAILTLNGRHLFGQPIKVNWA--------------------YASGQRED----TSG--- 503
AI + G+ L + I+ NWA SG ED T+G
Sbjct: 194 QTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAP 253
Query: 504 -----HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQD 668
+ ++VG+L+PEV+ L F A V+ + + R +GFGFV + + +
Sbjct: 254 ENNAQYTTVYVGNLAPEVSQVDLHRHF----HSLGAGVIEEVRVQRDKGFGFVRYSTHVE 309
Query: 669 AQSAI 683
A AI
Sbjct: 310 AALAI 314
>emb|CAB75429.1| oligouridylate binding protein [Nicotiana plumbaginifolia]
Length = 406
Score = 355 bits (912), Expect = 3e-97
Identities = 176/200 (88%), Positives = 182/200 (91%)
Frame = +3
Query: 93 MQNHRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGN 272
MQ RLKQQQQQALMQQ SLYHPGLLAPPQIEPI SGNLPPGFD STCRSVYVGN
Sbjct: 2 MQQQRLKQQQQQALMQQ------SLYHPGLLAPPQIEPILSGNLPPGFDSSTCRSVYVGN 55
Query: 273 IHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQP 452
IH QVTE LLQEVFA TGP+EGCKL RK+KSSYGF+ YFDRRSAALAI+TLNGRHLFGQP
Sbjct: 56 IHPQVTEPLLQEVFASTGPLEGCKLIRKDKSSYGFVDYFDRRSAALAIVTLNGRHLFGQP 115
Query: 453 IKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSR 632
IKVNWAYAS QREDTS HYNIFVGDLSPEVTDATLFACFSVY SCSDARVMWDQKTGRSR
Sbjct: 116 IKVNWAYASAQREDTSNHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSR 175
Query: 633 GFGFVSFRSQQDAQSAINDL 692
GFGFVSFR+QQ+AQSAINDL
Sbjct: 176 GFGFVSFRNQQEAQSAINDL 195
Score = 57.0 bits (136), Expect = 2e-07
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Frame = +3
Query: 237 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 404
D S +++VG++ +VT+ L F+ ++ +K+ +GF+ + +++ A
Sbjct: 129 DTSNHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRNQQEA 188
Query: 405 ALAILTLNGRHLFGQPIKVNWAY----ASGQR--------EDTSG--------------- 503
AI LNG+ L + I+ NWA A G++ E TSG
Sbjct: 189 QSAINDLNGKWLGSRQIRCNWAAKGAGAVGEQNSDAKSVVELTSGTSDDGQEKVVNEDAP 248
Query: 504 -----HYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQD 668
+ ++VG+L+PEVT L F A V+ D + R +GFGFV + S +
Sbjct: 249 ENNPQYTTVYVGNLAPEVTSVDLHRHFHAL----GAGVIEDVRIQRDKGFGFVRYSSHAE 304
Query: 669 AQSAI 683
A AI
Sbjct: 305 AARAI 309
Score = 49.7 bits (117), Expect = 4e-05
Identities = 28/73 (38%), Positives = 41/73 (55%), Gaps = 2/73 (2%)
Frame = +3
Query: 255 SVYVGNIHTQVTELLLQEVF--AGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 428
+VYVGN+ +VT + L F G G +E ++ R + +GF+ Y AA AI N
Sbjct: 256 TVYVGNLAPEVTSVDLHRHFHALGAGVIEDVRIQRDK--GFGFVRYSSHAEAARAIQLGN 313
Query: 429 GRHLFGQPIKVNW 467
R LFG+P+K +W
Sbjct: 314 ARLLFGKPVKCSW 326
>ref|NP_188026.1| oligouridylate binding protein (UBP1), putative; protein id:
At3g14100.1, supported by cDNA: 37712. [Arabidopsis
thaliana] gi|9294635|dbj|BAB02974.1| RNA binding protein
nucleolysin; oligouridylate binding protein [Arabidopsis
thaliana] gi|22655004|gb|AAM98093.1| AT3g14100/MAG2_5
[Arabidopsis thaliana] gi|28416511|gb|AAO42786.1|
AT3g14100/MAG2_5 [Arabidopsis thaliana]
Length = 427
Score = 352 bits (904), Expect = 2e-96
Identities = 171/205 (83%), Positives = 188/205 (91%), Gaps = 5/205 (2%)
Frame = +3
Query: 93 MQNHRLKQ----QQQQALMQQ-ALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRS 257
MQN RLKQ QQQQA+MQQ AL+QQ SLYHPG+LAPPQ+EP+PSGNLPPGFDPSTCRS
Sbjct: 1 MQNPRLKQHQQQQQQQAMMQQQALMQQHSLYHPGVLAPPQLEPVPSGNLPPGFDPSTCRS 60
Query: 258 VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRH 437
VYVGNIHTQVTE LLQE+F TGPVE KL RK+KSSYGF+HYFDRRSAALAIL+LNGRH
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 438 LFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK 617
LFGQPIKVNWAYA+GQREDTS H+NIFVGDLSPEVTDATL+ FSV+ SCSDARVMWDQK
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQK 180
Query: 618 TGRSRGFGFVSFRSQQDAQSAINDL 692
TGRSRGFGFVSFR+QQDAQ+AIN++
Sbjct: 181 TGRSRGFGFVSFRNQQDAQTAINEM 205
Score = 57.4 bits (137), Expect = 2e-07
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 36/185 (19%)
Frame = +3
Query: 237 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 404
D S+ +++VG++ +VT+ L + F+ ++ +K+ +GF+ + +++ A
Sbjct: 139 DTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 198
Query: 405 ALAILTLNGRHLFGQPIKVNWA--------------------YASGQRED---------- 494
AI +NG+ L + I+ NWA +G ED
Sbjct: 199 QTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETP 258
Query: 495 --TSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQD 668
S ++VG+L+PEVT L F A V+ + + R +GFGFV + + +
Sbjct: 259 ENNSQFTTVYVGNLAPEVTQLDLHRYFHAL----GAGVIEEVRVQRDKGFGFVRYNTHPE 314
Query: 669 AQSAI 683
A AI
Sbjct: 315 AALAI 319
Score = 42.7 bits (99), Expect = 0.005
Identities = 28/74 (37%), Positives = 42/74 (55%), Gaps = 3/74 (4%)
Frame = +3
Query: 255 SVYVGNIHTQVTELLLQEVF--AGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 428
+VYVGN+ +VT+L L F G G +E ++ R + +GF+ Y AALAI N
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK--GFGFVRYNTHPEAALAIQMGN 323
Query: 429 GR-HLFGQPIKVNW 467
+ +LF + IK +W
Sbjct: 324 TQPYLFNRQIKCSW 337
>gb|AAM65229.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
Length = 427
Score = 352 bits (904), Expect = 2e-96
Identities = 171/205 (83%), Positives = 188/205 (91%), Gaps = 5/205 (2%)
Frame = +3
Query: 93 MQNHRLKQ----QQQQALMQQ-ALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRS 257
MQN RLKQ QQQQA+MQQ AL+QQ SLYHPG+LAPPQ+EP+PSGNLPPGFDPSTCRS
Sbjct: 1 MQNPRLKQHQQQQQQQAMMQQQALMQQHSLYHPGVLAPPQLEPVPSGNLPPGFDPSTCRS 60
Query: 258 VYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRH 437
VYVGNIHTQVTE LLQE+F TGPVE KL RK+KSSYGF+HYFDRRSAALAIL+LNGRH
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 438 LFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK 617
LFGQPIKVNWAYA+GQREDTS H+NIFVGDLSPEVTDATL+ FSV+ SCSDARVMWDQK
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQK 180
Query: 618 TGRSRGFGFVSFRSQQDAQSAINDL 692
TGRSRGFGFVSFR+QQDAQ+AIN++
Sbjct: 181 TGRSRGFGFVSFRNQQDAQTAINEM 205
Score = 57.4 bits (137), Expect = 2e-07
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 36/185 (19%)
Frame = +3
Query: 237 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 404
D S+ +++VG++ +VT+ L + F+ ++ +K+ +GF+ + +++ A
Sbjct: 139 DTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 198
Query: 405 ALAILTLNGRHLFGQPIKVNWA--------------------YASGQRED---------- 494
AI +NG+ L + I+ NWA +G ED
Sbjct: 199 QTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETP 258
Query: 495 --TSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQD 668
S ++VG+L+PEVT L F A V+ + + R +GFGFV + + +
Sbjct: 259 ENNSQFTTVYVGNLAPEVTQLDLHRYFHAL----GAGVIEEVRVQRDKGFGFVRYNTHPE 314
Query: 669 AQSAI 683
A AI
Sbjct: 315 AALAI 319
Score = 42.7 bits (99), Expect = 0.005
Identities = 28/74 (37%), Positives = 42/74 (55%), Gaps = 3/74 (4%)
Frame = +3
Query: 255 SVYVGNIHTQVTELLLQEVF--AGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 428
+VYVGN+ +VT+L L F G G +E ++ R + +GF+ Y AALAI N
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK--GFGFVRYNTHPEAALAIQMGN 323
Query: 429 GR-HLFGQPIKVNW 467
+ +LF + IK +W
Sbjct: 324 TQPYLFNRQIKCSW 337
>ref|NP_175810.1| oligouridylate binding protein (UBP1), putative; protein id:
At1g54080.1, supported by cDNA: gi_13194791, supported
by cDNA: gi_13605626 [Arabidopsis thaliana]
gi|25405690|pir||E96581 hypothetical protein F15I1.16
[imported] - Arabidopsis thaliana
gi|4587549|gb|AAD25780.1|AC006577_16 Similar to
gb|U55861 RNA binding protein nucleolysin (TIAR) from
Mus musculus and contains several PF|00076 RNA
recognition motif domains. ESTs gb|T21032 and gb|T44127
come from this gene. [Arabidopsis thaliana]
gi|13194792|gb|AAK15558.1|AF348587_1 putative
oligouridylate binding protein [Arabidopsis thaliana]
gi|13605627|gb|AAK32807.1|AF361639_1 At1g54080/F15I1_16
[Arabidopsis thaliana] gi|22137190|gb|AAM91440.1|
At1g54080/F15I1_16 [Arabidopsis thaliana]
Length = 426
Score = 342 bits (876), Expect = 4e-93
Identities = 156/202 (77%), Positives = 184/202 (90%), Gaps = 1/202 (0%)
Frame = +3
Query: 90 KMQNHRLKQQQQQALMQQALLQQQ-SLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYV 266
K Q + +QQ QQA++QQA++QQ SLYHPG++APPQ+EP+PSGNLPPGFDP+TCRSVY
Sbjct: 8 KQQQQQQQQQHQQAMIQQAMMQQHPSLYHPGVMAPPQMEPLPSGNLPPGFDPTTCRSVYA 67
Query: 267 GNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFG 446
GNIHTQVTE+LLQE+FA TGP+E CKL RK+KSSYGF+HYFDRR A++AI+TLNGRH+FG
Sbjct: 68 GNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFG 127
Query: 447 QPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR 626
QP+KVNWAYA+GQREDTS H+NIFVGDLSPEVTDA LF FS + SCSDARVMWDQKTGR
Sbjct: 128 QPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGR 187
Query: 627 SRGFGFVSFRSQQDAQSAINDL 692
SRGFGFVSFR+QQDAQ+AIN++
Sbjct: 188 SRGFGFVSFRNQQDAQTAINEM 209
Score = 57.0 bits (136), Expect = 2e-07
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 36/185 (19%)
Frame = +3
Query: 237 DPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSA 404
D S+ +++VG++ +VT+ L + F+ ++ +K+ +GF+ + +++ A
Sbjct: 143 DTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 202
Query: 405 ALAILTLNGRHLFGQPIKVNWA--------------------YASGQREDTSGHYN---- 512
AI +NG+ + + I+ NWA +G ED N
Sbjct: 203 QTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAP 262
Query: 513 --------IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQD 668
++VG+LSPEVT L F A V+ + + R +GFGFV + + +
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTL----GAGVIEEVRVQRDKGFGFVRYNTHDE 318
Query: 669 AQSAI 683
A AI
Sbjct: 319 AALAI 323
Score = 42.4 bits (98), Expect = 0.006
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +3
Query: 255 SVYVGNIHTQVTELLLQEVF--AGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLN 428
+VYVGN+ +VT+L L +F G G +E ++ R + +GF+ Y AALAI N
Sbjct: 270 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK--GFGFVRYNTHDEAALAIQMGN 327
Query: 429 GR-HLFGQPIKVNW 467
+ LF + I+ +W
Sbjct: 328 AQPFLFSRQIRCSW 341
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,671,970
Number of Sequences: 1393205
Number of extensions: 13983624
Number of successful extensions: 76272
Number of sequences better than 10.0: 2176
Number of HSP's better than 10.0 without gapping: 49231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64599
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
