Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019561A_C01 KMC019561A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567906.1| putative protein; protein id: At4g32770.1, supp... 137 1e-31
sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplast pr... 131 6e-30
pir||T04448 hypothetical protein F4D11.30 - Arabidopsis thaliana... 123 1e-27
gb|ZP_00111944.1| hypothetical protein [Nostoc punctiforme] 64 1e-09
ref|ZP_00073283.1| hypothetical protein [Trichodesmium erythraeu... 58 7e-08
>ref|NP_567906.1| putative protein; protein id: At4g32770.1, supported by cDNA:
gi_14334011 [Arabidopsis thaliana]
gi|24212569|sp|Q94FY7|TOCC_ARATH Tocopherol cyclase,
chloroplast precursor (Vitamin E deficient 1) (Sucrose
export defective 1) gi|14334012|gb|AAK60503.1|AF302188_1
sucrose export defective 1 precursor [Arabidopsis
thaliana]
Length = 488
Score = 137 bits (344), Expect = 1e-31
Identities = 61/101 (60%), Positives = 78/101 (76%), Gaps = 1/101 (0%)
Frame = -1
Query: 559 DPGTPLRAPTSEAGLSQACKDTCFGILTLKIWERRYDGSKGKIILDVSSDMAALEVGGGP 380
+ GTPLRAPT+E GL+ AC+D+C+G L L+IWER YDGSKGK+IL+ S MAA+E+GGGP
Sbjct: 388 EAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGP 447
Query: 379 WFSTWKGKTT-MPPVIGPALGLPVDLDGIFNAVPLFKPPGL 260
WF TWKG T+ P ++ AL +P+DL+ VP FKPPGL
Sbjct: 448 WFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFFKPPGL 488
>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplast precursor (Sucrose export
defective 1) gi|14334010|gb|AAK60502.1|AF302187_1
sucrose export defective 1 [Zea mays]
Length = 474
Score = 131 bits (329), Expect = 6e-30
Identities = 59/100 (59%), Positives = 77/100 (77%)
Frame = -1
Query: 559 DPGTPLRAPTSEAGLSQACKDTCFGILTLKIWERRYDGSKGKIILDVSSDMAALEVGGGP 380
+ GT LRAPT EAGL ACKDTC+G L L++WE++YDGSKG++ILD +S+MAALEVGGGP
Sbjct: 376 ESGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGP 435
Query: 379 WFSTWKGKTTMPPVIGPALGLPVDLDGIFNAVPLFKPPGL 260
WF+ WKG T + V+ +G PVD++ + +P KPPGL
Sbjct: 436 WFNGWKGTTVVNEVVNNIVGTPVDVESLL-PIPFLKPPGL 474
>pir||T04448 hypothetical protein F4D11.30 - Arabidopsis thaliana
gi|3063693|emb|CAA18584.1| putative protein [Arabidopsis
thaliana] gi|7270224|emb|CAB79994.1| putative protein
[Arabidopsis thaliana]
Length = 455
Score = 123 bits (309), Expect = 1e-27
Identities = 61/125 (48%), Positives = 78/125 (61%), Gaps = 25/125 (20%)
Frame = -1
Query: 559 DPGTPLRAPTSEAGLSQACKDTCFGILTLKIWERRYDGSKGK------------------ 434
+ GTPLRAPT+E GL+ AC+D+C+G L L+IWER YDGSKGK
Sbjct: 331 EAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKLKVLTNPKAVKEDYERLL 390
Query: 433 ------IILDVSSDMAALEVGGGPWFSTWKGKTT-MPPVIGPALGLPVDLDGIFNAVPLF 275
+IL+ S MAA+E+GGGPWF TWKG T+ P ++ AL +P+DL+ VP F
Sbjct: 391 WLTMMQVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQALQVPLDLESALGLVPFF 450
Query: 274 KPPGL 260
KPPGL
Sbjct: 451 KPPGL 455
>gb|ZP_00111944.1| hypothetical protein [Nostoc punctiforme]
Length = 365
Score = 63.9 bits (154), Expect = 1e-09
Identities = 33/66 (50%), Positives = 43/66 (65%)
Frame = -1
Query: 553 GTPLRAPTSEAGLSQACKDTCFGILTLKIWERRYDGSKGKIILDVSSDMAALEVGGGPWF 374
GTPLRAPT+E GL C+DT G LTL++ R +G K +IIL S + LEVGGG W
Sbjct: 303 GTPLRAPTAE-GLRYCCRDTMQGKLTLEL--REINGRKSQIILKAESFLCGLEVGGGSWH 359
Query: 373 STWKGK 356
+ W+ +
Sbjct: 360 NVWQSR 365
>ref|ZP_00073283.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 358
Score = 58.2 bits (139), Expect = 7e-08
Identities = 34/63 (53%), Positives = 39/63 (60%)
Frame = -1
Query: 553 GTPLRAPTSEAGLSQACKDTCFGILTLKIWERRYDGSKGKIILDVSSDMAALEVGGGPWF 374
GT LRAP SE GL C+DT G LTLK+ E R S K+IL+ SD+ LEVGGG W
Sbjct: 297 GTLLRAP-SEQGLIFLCRDTMRGHLTLKLKEVR--DSHSKLILEARSDLCGLEVGGGSWE 353
Query: 373 STW 365
W
Sbjct: 354 QAW 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,486,985
Number of Sequences: 1393205
Number of extensions: 10620289
Number of successful extensions: 23859
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 23208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23841
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
