Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019559A_C01 KMC019559A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA32768.1| predicted protein [Neurospora crassa] 33 2.4
ref|NP_179708.1| unknown protein; protein id: At2g21120.1 [Arabi... 33 3.1
dbj|BAC43181.1| unknown protein [Arabidopsis thaliana] 33 3.1
ref|NP_384475.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium m... 32 6.9
gb|EAA27370.1| predicted protein [Neurospora crassa] 31 9.0
>gb|EAA32768.1| predicted protein [Neurospora crassa]
Length = 219
Score = 33.1 bits (74), Expect = 2.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 523 GEAAENGHAGVSSMHRGILCSRKNLRPVSNSCAVILHG 410
G +NGH G + M RG + +LR V+N+ AV+ G
Sbjct: 33 GTGKKNGHTGGTKMRRGASSTGSSLREVTNAAAVLAAG 70
>ref|NP_179708.1| unknown protein; protein id: At2g21120.1 [Arabidopsis thaliana]
gi|25412015|pir||D84597 hypothetical protein At2g21120
[imported] - Arabidopsis thaliana
gi|4803931|gb|AAD29804.1| unknown protein [Arabidopsis
thaliana]
Length = 323
Score = 32.7 bits (73), Expect = 3.1
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = -2
Query: 522 EKLQKMGMLGCLLCIVG 472
EKL+KMG+LGC+ CIVG
Sbjct: 95 EKLKKMGVLGCVSCIVG 111
>dbj|BAC43181.1| unknown protein [Arabidopsis thaliana]
Length = 328
Score = 32.7 bits (73), Expect = 3.1
Identities = 13/17 (76%), Positives = 16/17 (93%)
Frame = -2
Query: 522 EKLQKMGMLGCLLCIVG 472
EKL+KMG+LGC+ CIVG
Sbjct: 100 EKLKKMGVLGCVSCIVG 116
>ref|NP_384475.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
gi|7388482|sp|Q52996|Y369_RHIME Hypothetical protein
R00369 gi|15073298|emb|CAC41806.1| CONSERVED
HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 124
Score = 31.6 bits (70), Expect = 6.9
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -2
Query: 375 KLLLFYLLDCCSLDDFIVFSKDRSGS 298
+LL FYL+DC SLD+ + F++D S +
Sbjct: 77 QLLGFYLIDCASLDEALDFARDLSNA 102
>gb|EAA27370.1| predicted protein [Neurospora crassa]
Length = 775
Score = 31.2 bits (69), Expect = 9.0
Identities = 15/35 (42%), Positives = 19/35 (53%)
Frame = +1
Query: 205 NPPSPTTSHSSFTSIHLIGIIES*TKNRPHQTPRS 309
NPP P + SSF+ I+S T N P TP+S
Sbjct: 33 NPPKPPSRSSSFSFNTSFSSIDSATHNHPDSTPKS 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,186,648
Number of Sequences: 1393205
Number of extensions: 10583103
Number of successful extensions: 23951
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23865
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
