Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019537A_C01 KMC019537A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564040.1| GDP-L-fucose synthetase, putative; protein id: ... 86 2e-16
ref|NP_177468.1| GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-re... 84 1e-15
gb|ZP_00038030.1| hypothetical protein [Enterococcus faecium] 66 3e-10
gb|AAN05765.1| GDP-6-deoxy-4-keto-D-mannose-3-5-epimerase-4-redu... 65 6e-10
ref|ZP_00034325.1| hypothetical protein [Burkholderia fungorum] 64 1e-09
>ref|NP_564040.1| GDP-L-fucose synthetase, putative; protein id: At1g17890.1,
supported by cDNA: 19576., supported by cDNA:
gi_17380847, supported by cDNA: gi_20465282 [Arabidopsis
thaliana] gi|25305661|pir||B86314 F2H15.12 protein -
Arabidopsis thaliana
gi|9665067|gb|AAF97269.1|AC034106_12 Strong similarity
to GER1 from Arabidopsis thaliana gb|AF045286. ESTs
gb|AI996642, gb|AV533951 come from this gene
gi|17380848|gb|AAL36236.1| putative GDP-L-fucose
synthetase [Arabidopsis thaliana]
gi|20465283|gb|AAM20005.1| putative GDP-L-fucose
synthetase [Arabidopsis thaliana]
Length = 328
Score = 86.3 bits (212), Expect = 2e-16
Identities = 40/63 (63%), Positives = 52/63 (82%)
Frame = +2
Query: 314 SQDNNAALSSNSFLADKSAKVFVAGHRGLVGSAIVRRLTQLGFTNVILRSHSELDLTRQA 493
+ + + + S SF+ +KSAK+FVAGHRGLVGSAIVR+L GFTN++LR+HSELDLT Q+
Sbjct: 2 ADNTGSEMKSGSFMLEKSAKIFVAGHRGLVGSAIVRKLQDQGFTNLVLRTHSELDLTSQS 61
Query: 494 DVE 502
DVE
Sbjct: 62 DVE 64
>ref|NP_177468.1| GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase (GER1);
protein id: At1g73250.1, supported by cDNA: gi_7804473
[Arabidopsis thaliana] gi|25305665|pir||F96758
hypothetical protein T18K17.8 [imported] - Arabidopsis
thaliana gi|6016479|gb|AAC02703.2|
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
[Arabidopsis thaliana] gi|7804474|dbj|BAA95670.1|
GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
[Arabidopsis thaliana]
gi|12324315|gb|AAG52124.1|AC010556_6
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
(GER1); 21556-22494 [Arabidopsis thaliana]
Length = 312
Score = 83.6 bits (205), Expect = 1e-15
Identities = 38/50 (76%), Positives = 48/50 (96%)
Frame = +2
Query: 353 LADKSAKVFVAGHRGLVGSAIVRRLTQLGFTNVILRSHSELDLTRQADVE 502
++DKSAK+FVAGHRGLVGSAIVR+L + GFTN++L++H+ELDLTRQADVE
Sbjct: 1 MSDKSAKIFVAGHRGLVGSAIVRKLQEQGFTNLVLKTHAELDLTRQADVE 50
>gb|ZP_00038030.1| hypothetical protein [Enterococcus faecium]
Length = 314
Score = 65.9 bits (159), Expect = 3e-10
Identities = 30/47 (63%), Positives = 37/47 (77%)
Frame = +2
Query: 362 KSAKVFVAGHRGLVGSAIVRRLTQLGFTNVILRSHSELDLTRQADVE 502
K AK++VAGHRG+VGSAIVR L + G+ N+I R+H ELDL RQ VE
Sbjct: 4 KDAKIYVAGHRGMVGSAIVRELNRQGYNNIITRTHKELDLCRQDQVE 50
>gb|AAN05765.1| GDP-6-deoxy-4-keto-D-mannose-3-5-epimerase-4-reductase MerA
[Mycobacterium avium]
Length = 326
Score = 64.7 bits (156), Expect = 6e-10
Identities = 30/53 (56%), Positives = 42/53 (78%)
Frame = +2
Query: 335 LSSNSFLADKSAKVFVAGHRGLVGSAIVRRLTQLGFTNVILRSHSELDLTRQA 493
+S++ D+S V++AGHRGLVGSA++RR GFTN++LRSH+ELDLT +A
Sbjct: 7 MSTSVGALDRSTPVYIAGHRGLVGSALLRRFQAEGFTNLLLRSHNELDLTDRA 59
>ref|ZP_00034325.1| hypothetical protein [Burkholderia fungorum]
Length = 319
Score = 63.9 bits (154), Expect = 1e-09
Identities = 29/48 (60%), Positives = 39/48 (80%)
Frame = +2
Query: 359 DKSAKVFVAGHRGLVGSAIVRRLTQLGFTNVILRSHSELDLTRQADVE 502
DK+A++FVAGHRG+VGSA++R L G+ NV+ RS ++LDLT QA VE
Sbjct: 5 DKNARIFVAGHRGMVGSALLRNLASRGYGNVVTRSRADLDLTDQAAVE 52
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,643,076
Number of Sequences: 1393205
Number of extensions: 9078683
Number of successful extensions: 41891
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 40233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41796
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
