Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019534A_C01 KMC019534A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK27816.1|AC022457_19 putative WD-repeat containing protein ... 59 4e-08
ref|NP_563708.1| putative pre-mRNA splicing factor PRP19; protei... 59 5e-08
pir||E86177 hypothetical protein [imported] - Arabidopsis thalia... 59 5e-08
ref|NP_180892.2| putative PRP19-like spliceosomal protein; prote... 44 0.001
pir||C84744 probable PRP19-like spliceosomal protein [imported] ... 44 0.001
>gb|AAK27816.1|AC022457_19 putative WD-repeat containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 527
Score = 58.9 bits (141), Expect = 4e-08
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = -3
Query: 527 KATCVKFGPDSKYVAVGSMDRNLRIFGLPGEDD 429
K T VKFG D+KY+AVGSMDRNLRIFG PGEDD
Sbjct: 485 KVTNVKFGTDAKYIAVGSMDRNLRIFGHPGEDD 517
>ref|NP_563708.1| putative pre-mRNA splicing factor PRP19; protein id: At1g04510.1,
supported by cDNA: gi_14532631 [Arabidopsis thaliana]
gi|14532632|gb|AAK64044.1| putative pre-mRNA splicing
factor PRP19 [Arabidopsis thaliana]
gi|23296618|gb|AAN13133.1| putative pre-mRNA splicing
factor PRP19 [Arabidopsis thaliana]
Length = 523
Score = 58.5 bits (140), Expect = 5e-08
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = -3
Query: 527 KATCVKFGPDSKYVAVGSMDRNLRIFGLPGEDD 429
KAT VKFG DSKY+AVGSMDRNLRIFGLP +D+
Sbjct: 483 KATSVKFGLDSKYIAVGSMDRNLRIFGLPDDDN 515
>pir||E86177 hypothetical protein [imported] - Arabidopsis thaliana
gi|2341025|gb|AAB70423.1| F19P19.2 [Arabidopsis
thaliana]
Length = 580
Score = 58.5 bits (140), Expect = 5e-08
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = -3
Query: 527 KATCVKFGPDSKYVAVGSMDRNLRIFGLPGEDD 429
KAT VKFG DSKY+AVGSMDRNLRIFGLP +D+
Sbjct: 540 KATSVKFGLDSKYIAVGSMDRNLRIFGLPDDDN 572
>ref|NP_180892.2| putative PRP19-like spliceosomal protein; protein id: At2g33340.1,
supported by cDNA: gi_19423887 [Arabidopsis thaliana]
Length = 565
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -3
Query: 527 KATCVKFGPDSKYVAVGSMDRN 462
KATCVKFG D++YVAVGSMDRN
Sbjct: 482 KATCVKFGSDAQYVAVGSMDRN 503
>pir||C84744 probable PRP19-like spliceosomal protein [imported] - Arabidopsis
thaliana gi|2459417|gb|AAB80652.1| putative PRP19-like
spliceosomal protein [Arabidopsis thaliana]
Length = 540
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -3
Query: 527 KATCVKFGPDSKYVAVGSMDRN 462
KATCVKFG D++YVAVGSMDRN
Sbjct: 457 KATCVKFGSDAQYVAVGSMDRN 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,584,433
Number of Sequences: 1393205
Number of extensions: 8708171
Number of successful extensions: 19111
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 18313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19098
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
