Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019515A_C01 KMC019515A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63649.1| unknown [Arabidopsis thaliana] 120 2e-26
pir||A71401 hypothetical protein - Arabidopsis thaliana gi|22447... 119 3e-26
ref|NP_567417.1| expressed protein; protein id: At4g14000.1, sup... 119 3e-26
ref|NP_565997.1| expressed protein; protein id: At2g43320.1, sup... 63 2e-09
gb|AAL16294.1|AF428364_1 At2g43320/T1O24.6 [Arabidopsis thaliana] 63 2e-09
>gb|AAM63649.1| unknown [Arabidopsis thaliana]
Length = 290
Score = 120 bits (300), Expect = 2e-26
Identities = 65/116 (56%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Frame = +1
Query: 226 TFRLFSSA---GSGVGIFDDAAQQVPAIPPPPCVEVLASESDVPSSAKHNVEPVNVDGVT 396
TF+LFSS+ G G+G D +P PPPP VEVL+SE V SS V+ + + +T
Sbjct: 6 TFQLFSSSQGSGLGLGFLDSPEPALP--PPPPPVEVLSSE--VSSSTDFEVDKLTIGEIT 61
Query: 397 LLKGRVNTRQVFGLSNSDLVPGKYEGGLKLWEGSLDLIKALRSDIKSGLVSFGEKR 564
LLKGRV+T++VFGL NSDLVPG YEGGLKLWEGS+DL+KAL + ++G +SF KR
Sbjct: 62 LLKGRVSTKEVFGLPNSDLVPGVYEGGLKLWEGSIDLVKALEKESQTGNLSFSGKR 117
>pir||A71401 hypothetical protein - Arabidopsis thaliana
gi|2244756|emb|CAB10179.1| hypothetical protein
[Arabidopsis thaliana] gi|7268104|emb|CAB78442.1|
hypothetical protein [Arabidopsis thaliana]
Length = 269
Score = 119 bits (297), Expect = 3e-26
Identities = 67/123 (54%), Positives = 86/123 (69%), Gaps = 3/123 (2%)
Frame = +1
Query: 205 AQKPSADTFRLFSSA---GSGVGIFDDAAQQVPAIPPPPCVEVLASESDVPSSAKHNVEP 375
A KP TF+LFSS+ G G+G D + +P PPPP VEVL+ E V SS V+
Sbjct: 2 ATKP---TFQLFSSSQGSGLGLGFLDSSEPALP--PPPPPVEVLSFE--VSSSTDFEVDK 54
Query: 376 VNVDGVTLLKGRVNTRQVFGLSNSDLVPGKYEGGLKLWEGSLDLIKALRSDIKSGLVSFG 555
+ + +TLLKGRV+T++VFGL NSDLVPG YEGGLKLWEGS+DL+KAL + ++G +SF
Sbjct: 55 LTIGEITLLKGRVSTKEVFGLPNSDLVPGVYEGGLKLWEGSIDLVKALEKESQTGNLSFS 114
Query: 556 EKR 564
KR
Sbjct: 115 GKR 117
>ref|NP_567417.1| expressed protein; protein id: At4g14000.1, supported by cDNA:
25991., supported by cDNA: gi_18252964 [Arabidopsis
thaliana] gi|18252965|gb|AAL62409.1| unknown protein
[Arabidopsis thaliana] gi|21389669|gb|AAM48033.1|
unknown protein [Arabidopsis thaliana]
Length = 290
Score = 119 bits (297), Expect = 3e-26
Identities = 67/123 (54%), Positives = 86/123 (69%), Gaps = 3/123 (2%)
Frame = +1
Query: 205 AQKPSADTFRLFSSA---GSGVGIFDDAAQQVPAIPPPPCVEVLASESDVPSSAKHNVEP 375
A KP TF+LFSS+ G G+G D + +P PPPP VEVL+ E V SS V+
Sbjct: 2 ATKP---TFQLFSSSQGSGLGLGFLDSSEPALP--PPPPPVEVLSFE--VSSSTDFEVDK 54
Query: 376 VNVDGVTLLKGRVNTRQVFGLSNSDLVPGKYEGGLKLWEGSLDLIKALRSDIKSGLVSFG 555
+ + +TLLKGRV+T++VFGL NSDLVPG YEGGLKLWEGS+DL+KAL + ++G +SF
Sbjct: 55 LTIGEITLLKGRVSTKEVFGLPNSDLVPGVYEGGLKLWEGSIDLVKALEKESQTGNLSFS 114
Query: 556 EKR 564
KR
Sbjct: 115 GKR 117
>ref|NP_565997.1| expressed protein; protein id: At2g43320.1, supported by cDNA:
gi_14517475, supported by cDNA: gi_16226902 [Arabidopsis
thaliana] gi|14517476|gb|AAK62628.1| At2g43320/T1O24.6
[Arabidopsis thaliana] gi|20196858|gb|AAB64311.2|
expressed protein [Arabidopsis thaliana]
gi|20197145|gb|AAM14937.1| expressed protein
[Arabidopsis thaliana] gi|22136568|gb|AAM91070.1|
At2g43320/T1O24.6 [Arabidopsis thaliana]
Length = 351
Score = 63.2 bits (152), Expect = 2e-09
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +1
Query: 304 PPPCVEVLASESDVPSSAKHNVEPVNVD--GVTLLKGRVNTRQVFGLSNSDLVPGKYEGG 477
P P VE++ S++ A H N+D G+ + KG+V+ + GLS S+ P K EG
Sbjct: 33 PTPAVEIIPSKT----VAHHRYSGENLDALGLQVFKGKVSVADIIGLSGSETAPLKNEGS 88
Query: 478 LKLWEGSLDLIKALRSDIKSGLVSFGEKR 564
LK WE S+ L+ L+++I+ G +SF KR
Sbjct: 89 LKSWESSVVLVNVLKNEIRDGQLSFRGKR 117
>gb|AAL16294.1|AF428364_1 At2g43320/T1O24.6 [Arabidopsis thaliana]
Length = 351
Score = 63.2 bits (152), Expect = 2e-09
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Frame = +1
Query: 304 PPPCVEVLASESDVPSSAKHNVEPVNVD--GVTLLKGRVNTRQVFGLSNSDLVPGKYEGG 477
P P VE++ S++ A H N+D G+ + KG+V+ + GLS S+ P K EG
Sbjct: 33 PTPAVEIIPSKT----VAHHRYSGENLDALGLQVFKGKVSVADIIGLSGSETAPLKNEGS 88
Query: 478 LKLWEGSLDLIKALRSDIKSGLVSFGEKR 564
LK WE S+ L+ L+++I+ G +SF KR
Sbjct: 89 LKSWESSVVLVNVLKNEIRDGQLSFRGKR 117
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,696,729
Number of Sequences: 1393205
Number of extensions: 11331636
Number of successful extensions: 47009
Number of sequences better than 10.0: 313
Number of HSP's better than 10.0 without gapping: 40530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45837
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
