Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019472A_C01 KMC019472A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S49463 RNA-binding protein RNP1 precursor - kidney bean gi|... 259 1e-68
pir||T12196 RNA-binding protein - fava bean (fragment) gi|210468... 232 3e-60
ref|NP_176208.1| chloroplast RNA-binding protein, putative; prot... 159 3e-38
gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa] 110 1e-23
dbj|BAC10140.1| putative ribonucleoprotein [Oryza sativa (japoni... 107 1e-22
>pir||S49463 RNA-binding protein RNP1 precursor - kidney bean
gi|558629|emb|CAA57551.1| chloroplast RNA binding
protein [Phaseolus vulgaris]
Length = 287
Score = 259 bits (663), Expect = 1e-68
Identities = 147/210 (70%), Positives = 169/210 (80%), Gaps = 19/210 (9%)
Frame = +2
Query: 26 AAAAGIASSLFSSSINTNVKCLRSKNCSVLASVSQSYL------------VEPLSIGGTI 169
A AAGIAS LFSSSIN +VKCLRSK+CS++ + + L VEPLSIGGT
Sbjct: 3 ATAAGIAS-LFSSSIN-SVKCLRSKHCSMMDPLMTAMLSNRIFAPVSHLVVEPLSIGGTT 60
Query: 170 SHNKLWVPRISAAVAQEEVALAAEADDGLVEEKV------EEVVAEEEANSS-VNTKLYF 328
SH +LW PRISAAVAQEEV + +A GLVEE+ EEVVAE++++ S +TKLYF
Sbjct: 61 SH-RLWGPRISAAVAQEEVVVVDDA--GLVEEEKVEENEGEEVVAEQDSDESFASTKLYF 117
Query: 329 GNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGK 508
GNLPYSVDSA+LAGLI++YGSAELIEVLYDRD+GKSRGFAFVTMSC+EDCN VIENLDGK
Sbjct: 118 GNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGK 177
Query: 509 EFLGRTLRVNLSDKPKPKEPLYPETEHKLF 598
E+LGRTLRVN S+KPK KEPLYPETEHKLF
Sbjct: 178 EYLGRTLRVNFSNKPKAKEPLYPETEHKLF 207
Score = 60.8 bits (146), Expect = 1e-08
Identities = 32/88 (36%), Positives = 49/88 (55%)
Frame = +2
Query: 284 AEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMS 463
A+E KL+ GNL +SV + L +EYG+ VLYD ++G+SRG+ FV S
Sbjct: 194 AKEPLYPETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFS 253
Query: 464 CVEDCNTVIENLDGKEFLGRTLRVNLSD 547
E+ + L+ E GR +RV+L++
Sbjct: 254 TKEEMEAALGALNDVELEGRAMRVSLAE 281
>pir||T12196 RNA-binding protein - fava bean (fragment)
gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein
[Vicia faba]
Length = 289
Score = 232 bits (591), Expect = 3e-60
Identities = 128/198 (64%), Positives = 144/198 (72%), Gaps = 14/198 (7%)
Frame = +2
Query: 47 SSLFSSSINTNVKCLRSKNCSVLASVSQSYLVEPLSIGGTISHNKLWVPRISAAVAQEEV 226
SSLFSSSINT VK RS N + V VEPL IG TIS KLW+PR AVAQEE
Sbjct: 19 SSLFSSSINT-VKSSRSSNRMFASVVIPQSSVEPLCIGTTISSQKLWMPRFYVAVAQEEA 77
Query: 227 ALAAEADDGLV--------------EEKVEEVVAEEEANSSVNTKLYFGNLPYSVDSAQL 364
+A + ++ +V +E EE+VAEE+ TKLYFGNLPYSVDSA+L
Sbjct: 78 VVAVDDEEKVVVEEEEKENEEGQGEKENGEEIVAEEDTR----TKLYFGNLPYSVDSAKL 133
Query: 365 AGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLS 544
AGLIEEYGSAEL+EVLYDRD+GKSRGFAF TM+CVEDC VIENLDGKEF+GRTLRVN S
Sbjct: 134 AGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKAVIENLDGKEFMGRTLRVNFS 193
Query: 545 DKPKPKEPLYPETEHKLF 598
DKPK KE LYPETE+KLF
Sbjct: 194 DKPKAKESLYPETEYKLF 211
Score = 53.5 bits (127), Expect = 2e-06
Identities = 28/87 (32%), Positives = 46/87 (52%)
Frame = +2
Query: 284 AEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMS 463
A+E KL+ GNL + V S L +E+G+ V+YD ++G SRG+ FV+ +
Sbjct: 198 AKESLYPETEYKLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYA 257
Query: 464 CVEDCNTVIENLDGKEFLGRTLRVNLS 544
+ + ++ E GR LRV+L+
Sbjct: 258 NKSEMEAALTIMNDVELEGRALRVSLA 284
>ref|NP_176208.1| chloroplast RNA-binding protein, putative; protein id: At1g60000.1,
supported by cDNA: 41722., supported by cDNA:
gi_13194797 [Arabidopsis thaliana]
gi|25386566|pir||C96624 hypothetical protein T2K10.5
[imported] - Arabidopsis thaliana
gi|4249379|gb|AAD14476.1|AAD14476 Strong similarity to
gb|X82030 chloroplast RNA binding protein (RNP1) from
Phaseolus vulgaris. [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic
acid-binding protein [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein,
putative [Arabidopsis thaliana]
Length = 258
Score = 159 bits (402), Expect = 3e-38
Identities = 77/114 (67%), Positives = 96/114 (83%), Gaps = 1/114 (0%)
Frame = +2
Query: 260 EEKVEEVVAEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSR 439
EEK + A + ++VNTKLYFGNLPY+VDSA LA +I+++ + EL+EVLY+RD+G+SR
Sbjct: 67 EEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSR 126
Query: 440 GFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKP-KEPLYPETEHKLF 598
GFAFVTMS VEDCN +I+NLDG E+LGR L+VN +DKPKP KEPLYPETEHKLF
Sbjct: 127 GFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLF 180
Score = 68.9 bits (167), Expect = 5e-11
Identities = 35/80 (43%), Positives = 48/80 (59%)
Frame = +2
Query: 317 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 496
KL+ GNL ++V S LAG E G V++D D+G+SRG+ FV S + T +E+
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 497 LDGKEFLGRTLRVNLSDKPK 556
LDG E GR +RVNL+ K
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa]
Length = 265
Score = 110 bits (276), Expect = 1e-23
Identities = 70/175 (40%), Positives = 109/175 (62%)
Frame = +2
Query: 41 IASSLFSSSINTNVKCLRSKNCSVLASVSQSYLVEPLSIGGTISHNKLWVPRISAAVAQE 220
+A++LFS++++ ++ L S + + AS S S+L +PL ++ W R ++
Sbjct: 1 MAATLFSTALSPHLLPLPSTSSNP-ASSSLSFLSKPLLPALAVAG---WPRRRTSPFVPV 56
Query: 221 EVALAAEADDGLVEEKVEEVVAEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAEL 400
VA++ E + EE+ EE EE + + +++ GNLP+SVDSAQLAGL E+ GS E+
Sbjct: 57 AVAVSEEVETEEDEEEEEEGSGGEEFSDDL--RVFVGNLPFSVDSAQLAGLFEQAGSVEM 114
Query: 401 IEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKE 565
+EV+YD+ +G+SRGF FVTMS VE+ +E +G GR+LRVN S P P+E
Sbjct: 115 VEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVN-SGPPPPRE 168
Score = 73.9 bits (180), Expect = 1e-12
Identities = 34/82 (41%), Positives = 50/82 (60%)
Frame = +2
Query: 317 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 496
++Y GNL + VD+A LA L G +V+YDR+SG+SRGF FVT E+ + N
Sbjct: 181 RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSN 240
Query: 497 LDGKEFLGRTLRVNLSDKPKPK 562
LDG + GR +RV +++ P+
Sbjct: 241 LDGADMDGRQIRVTVAESKPPR 262
>dbj|BAC10140.1| putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)]
Length = 264
Score = 107 bits (267), Expect = 1e-22
Identities = 59/120 (49%), Positives = 79/120 (65%)
Frame = +2
Query: 224 VALAAEADDGLVEEKVEEVVAEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELI 403
VA+A ++ VEE EE AE E + + K++ GNLP+SVDSAQLAGL E+ GS E++
Sbjct: 55 VAVAVSSE---VEE--EEGGAESEGEFAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMV 109
Query: 404 EVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPET 583
EV+YDR +G+SRGF FVTMS E+ +E +G F GR LRVN S P P++ P +
Sbjct: 110 EVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVN-SGPPPPRDDFAPRS 168
Score = 78.2 bits (191), Expect = 8e-14
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +2
Query: 296 ANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVED 475
+N + KLY GNL + VD++ L L E G+ +V+YDR+SG+SRGF FVT E+
Sbjct: 174 SNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEE 233
Query: 476 CNTVIENLDGKEFLGRTLRVNLSD-KPK 556
N I NLDG + GR +RV +++ KP+
Sbjct: 234 VNNAISNLDGVDLDGRQIRVTVAESKPR 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,918,400
Number of Sequences: 1393205
Number of extensions: 10692982
Number of successful extensions: 51477
Number of sequences better than 10.0: 2249
Number of HSP's better than 10.0 without gapping: 43044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49903
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
