Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019465A_C01 KMC019465A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565571.1| putative replication protein A1; protein id: At... 49 7e-05
pir||C84637 probable replication protein A1 [imported] - Arabido... 49 7e-05
gb|AAF26967.1|AC018363_12 putative replication factor A [Arabido... 41 0.014
ref|NP_566188.1| putative replication factor A; protein id: At3g... 41 0.014
gb|AAK92503.1|AF400586_1 mismatch repair protein [Acinetobacter ... 38 0.12
>ref|NP_565571.1| putative replication protein A1; protein id: At2g24490.1, supported
by cDNA: 7536. [Arabidopsis thaliana]
gi|20197764|gb|AAD18120.2| putative replication protein
A1 [Arabidopsis thaliana] gi|21594953|gb|AAM66059.1|
putative replication protein A1 [Arabidopsis thaliana]
gi|26450159|dbj|BAC42198.1| putative replication protein
A1 [Arabidopsis thaliana] gi|28973057|gb|AAO63853.1|
putative replication protein A1 [Arabidopsis thaliana]
Length = 279
Score = 48.5 bits (114), Expect = 7e-05
Identities = 26/58 (44%), Positives = 36/58 (61%), Gaps = 1/58 (1%)
Frame = -3
Query: 617 VLDVLLLPTSRAKEEGVSQDLIAQHLGIPLDKLMPAIKSLGDDGAIYETIAE-HYKSI 447
+LD L P A+++G+ D IAQ L IP +KL ++SL DG IY TI E H+K +
Sbjct: 220 ILDYLKQPACTARQQGIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFKHV 277
>pir||C84637 probable replication protein A1 [imported] - Arabidopsis thaliana
Length = 250
Score = 48.5 bits (114), Expect = 7e-05
Identities = 26/58 (44%), Positives = 36/58 (61%), Gaps = 1/58 (1%)
Frame = -3
Query: 617 VLDVLLLPTSRAKEEGVSQDLIAQHLGIPLDKLMPAIKSLGDDGAIYETIAE-HYKSI 447
+LD L P A+++G+ D IAQ L IP +KL ++SL DG IY TI E H+K +
Sbjct: 191 ILDYLKQPACTARQQGIHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFKHV 248
>gb|AAF26967.1|AC018363_12 putative replication factor A [Arabidopsis thaliana]
Length = 282
Score = 40.8 bits (94), Expect = 0.014
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = -3
Query: 617 VLDVLLLPTSRAKEEGVSQDLIAQHLGIPLDKLMPAIKSLGDDGAIYETIAE 462
VL+ L P E GV D+IA+ L IPL ++ A++ L +DG IY T+ E
Sbjct: 222 VLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSNDGCIYSTLDE 273
>ref|NP_566188.1| putative replication factor A; protein id: At3g02920.1, supported
by cDNA: 118359. [Arabidopsis thaliana]
gi|21537031|gb|AAM61372.1| putative replication factor A
[Arabidopsis thaliana] gi|26450657|dbj|BAC42439.1|
putative replication factor A [Arabidopsis thaliana]
Length = 278
Score = 40.8 bits (94), Expect = 0.014
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = -3
Query: 617 VLDVLLLPTSRAKEEGVSQDLIAQHLGIPLDKLMPAIKSLGDDGAIYETIAE 462
VL+ L P E GV D+IA+ L IPL ++ A++ L +DG IY T+ E
Sbjct: 218 VLNYLNQPMHIVSEAGVHCDIIARELRIPLLQVKEALEQLSNDGCIYSTLDE 269
>gb|AAK92503.1|AF400586_1 mismatch repair protein [Acinetobacter johnsonii]
Length = 837
Score = 37.7 bits (86), Expect = 0.12
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = -3
Query: 614 LDVLLLPTSRAKEEGVSQDLIAQHLGIPLDKLMPAIKSLGDDGAIYETIAEHYKSIVDC* 435
+ + LL S + Q+ + LGI L +LMP+ + L D+ + I EH K ++DC
Sbjct: 105 IGIALLDLSAGLFKVQQQEFQLEQLGIELSRLMPS-EILVDENIVDPNIIEHIKKLLDC- 162
Query: 434 DHMVDRQRHQSCQSKLNSAQPCTC-EYELVTY*G 336
R + LN+AQ C ++E+ T G
Sbjct: 163 ----PVTRRPNVDFNLNNAQKTLCDQFEVSTLAG 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,284,771
Number of Sequences: 1393205
Number of extensions: 10167524
Number of successful extensions: 21790
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21780
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
