Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019421A_C01 KMC019421A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09355 hypothetical protein F23K16.20 - Arabidopsis thalian... 161 3e-39
gb|AAM64952.1| unknown [Arabidopsis thaliana] 161 3e-39
ref|NP_568059.1| putative protein; protein id: At4g39390.1, supp... 161 3e-39
gb|AAM66068.1| unknown [Arabidopsis thaliana] 159 1e-38
ref|NP_564433.1| expressed protein; protein id: At1g34020.1, sup... 159 1e-38
>pir||T09355 hypothetical protein F23K16.20 - Arabidopsis thaliana
gi|5042155|emb|CAB44674.1| putative protein [Arabidopsis
thaliana] gi|7270923|emb|CAB80602.1| putative protein
[Arabidopsis thaliana]
Length = 342
Score = 161 bits (408), Expect = 3e-39
Identities = 78/96 (81%), Positives = 90/96 (93%)
Frame = -2
Query: 482 FFITLSCTIAVGTNLSQFICIGRFSAVSFQVIGHMKTILVLILGFIFFGKEGLNVQVIIG 303
FF+ LSC+IAVGTNLSQFICIGRF+AVSFQV+GHMKTILVL+LGF FFGKEGLN+QV++G
Sbjct: 237 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 296
Query: 302 MAIAILGMIWYGNASSKPGGKERRSIISNPVTQPQE 195
M IAILGMIWYGNASSKPGGKERRS +S P+T+ Q+
Sbjct: 297 MLIAILGMIWYGNASSKPGGKERRS-LSIPITKSQK 331
>gb|AAM64952.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 161 bits (408), Expect = 3e-39
Identities = 78/96 (81%), Positives = 90/96 (93%)
Frame = -2
Query: 482 FFITLSCTIAVGTNLSQFICIGRFSAVSFQVIGHMKTILVLILGFIFFGKEGLNVQVIIG 303
FF+ LSC+IAVGTNLSQFICIGRF+AVSFQV+GHMKTILVL+LGF FFGKEGLN+QV++G
Sbjct: 228 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 287
Query: 302 MAIAILGMIWYGNASSKPGGKERRSIISNPVTQPQE 195
M IAILGMIWYGNASSKPGGKERRS +S P+T+ Q+
Sbjct: 288 MLIAILGMIWYGNASSKPGGKERRS-LSIPITKSQK 322
>ref|NP_568059.1| putative protein; protein id: At4g39390.1, supported by cDNA:
35002., supported by cDNA: gi_20259515 [Arabidopsis
thaliana] gi|20259516|gb|AAM13878.1| unknown protein
[Arabidopsis thaliana] gi|23296523|gb|AAN13117.1|
unknown protein [Arabidopsis thaliana]
Length = 337
Score = 161 bits (408), Expect = 3e-39
Identities = 78/96 (81%), Positives = 90/96 (93%)
Frame = -2
Query: 482 FFITLSCTIAVGTNLSQFICIGRFSAVSFQVIGHMKTILVLILGFIFFGKEGLNVQVIIG 303
FF+ LSC+IAVGTNLSQFICIGRF+AVSFQV+GHMKTILVL+LGF FFGKEGLN+QV++G
Sbjct: 232 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 291
Query: 302 MAIAILGMIWYGNASSKPGGKERRSIISNPVTQPQE 195
M IAILGMIWYGNASSKPGGKERRS +S P+T+ Q+
Sbjct: 292 MLIAILGMIWYGNASSKPGGKERRS-LSIPITKSQK 326
>gb|AAM66068.1| unknown [Arabidopsis thaliana]
Length = 335
Score = 159 bits (403), Expect = 1e-38
Identities = 79/111 (71%), Positives = 95/111 (85%)
Frame = -2
Query: 479 FITLSCTIAVGTNLSQFICIGRFSAVSFQVIGHMKTILVLILGFIFFGKEGLNVQVIIGM 300
FITLSCTIA+GTNLSQFICIGRF+AVSFQV+GHMKTILVLI+GF FFG+EGLN+ V++GM
Sbjct: 228 FITLSCTIAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLHVVVGM 287
Query: 299 AIAILGMIWYGNASSKPGGKERRSIISNPVTQPQEYIVLPVVVSSETDDQE 147
IA+LGMIWYGNASSKPGGKERR+ S P T+ Q+ + +S++DD E
Sbjct: 288 IIAVLGMIWYGNASSKPGGKERRN-YSLPTTRQQK-----LGAASDSDDNE 332
>ref|NP_564433.1| expressed protein; protein id: At1g34020.1, supported by cDNA:
7642. [Arabidopsis thaliana] gi|25354483|pir||A86464
hypothetical protein F12G12.16 - Arabidopsis thaliana
gi|10086480|gb|AAG12540.1|AC015446_21 Unknown protein
[Arabidopsis thaliana]
gi|10092449|gb|AAG12852.1|AC079286_9 unknown protein;
21747-23353 [Arabidopsis thaliana]
Length = 335
Score = 159 bits (403), Expect = 1e-38
Identities = 79/111 (71%), Positives = 95/111 (85%)
Frame = -2
Query: 479 FITLSCTIAVGTNLSQFICIGRFSAVSFQVIGHMKTILVLILGFIFFGKEGLNVQVIIGM 300
FITLSCTIA+GTNLSQFICIGRF+AVSFQV+GHMKTILVLI+GF FFG+EGLN+ V++GM
Sbjct: 228 FITLSCTIAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLHVVVGM 287
Query: 299 AIAILGMIWYGNASSKPGGKERRSIISNPVTQPQEYIVLPVVVSSETDDQE 147
IA+LGMIWYGNASSKPGGKERR+ S P T+ Q+ + +S++DD E
Sbjct: 288 IIAVLGMIWYGNASSKPGGKERRN-YSLPTTRQQK-----LGAASDSDDNE 332
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,670,663
Number of Sequences: 1393205
Number of extensions: 9537825
Number of successful extensions: 33778
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 33183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33758
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
