Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019393A_C01 KMC019393A_c01
(730 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S39552 5B protein - tomato gi|415833|emb|CAA80273.1| 5B pro... 122 4e-27
ref|NP_190781.1| 5B protein like protein; protein id: At3g52130.... 122 7e-27
ref|NP_187401.1| putative 5B-anther specific protein; protein id... 104 1e-21
ref|NP_199660.1| putative protein; protein id: At5g48490.1, supp... 49 9e-05
gb|AAO22703.1| unknown protein [Arabidopsis thaliana] 49 9e-05
>pir||S39552 5B protein - tomato gi|415833|emb|CAA80273.1| 5B protein
[Lycopersicon esculentum]
Length = 105
Score = 122 bits (307), Expect = 4e-27
Identities = 52/70 (74%), Positives = 63/70 (89%)
Frame = -1
Query: 730 FSALVQLIPCRAAVAPFSPIPPNEACCNALKSLGQPCLCVLVNGPPISGVDRNMASLLPE 551
FSAL+QLIPCRA+V PFS +PP+EACC ++K+LGQPCLCVL+NGPPISGVDRNMA LPE
Sbjct: 33 FSALIQLIPCRASVVPFSSVPPSEACCASIKALGQPCLCVLINGPPISGVDRNMAVQLPE 92
Query: 550 KCTTSFDPCD 521
KCT +F+ C+
Sbjct: 93 KCTANFEQCE 102
>ref|NP_190781.1| 5B protein like protein; protein id: At3g52130.1 [Arabidopsis
thaliana] gi|11357148|pir||T49092 5B-like protein -
Arabidopsis thaliana gi|4678942|emb|CAB41333.1| 5B
protein like protein [Arabidopsis thaliana]
Length = 125
Score = 122 bits (305), Expect = 7e-27
Identities = 52/72 (72%), Positives = 64/72 (88%)
Frame = -1
Query: 730 FSALVQLIPCRAAVAPFSPIPPNEACCNALKSLGQPCLCVLVNGPPISGVDRNMASLLPE 551
FSALVQLIPCRAAVAPFSPIPP E CC+A+ +LG+PCLC+L NGPP+SG+DR+MA LP+
Sbjct: 53 FSALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGPPLSGIDRSMALQLPQ 112
Query: 550 KCTTSFDPCDII 515
+C+ +F PCDII
Sbjct: 113 RCSANFPPCDII 124
>ref|NP_187401.1| putative 5B-anther specific protein; protein id: At3g07450.1
[Arabidopsis thaliana]
gi|6041843|gb|AAF02152.1|AC009853_12 putative 5B-anther
specific protein [Arabidopsis thaliana]
Length = 106
Score = 104 bits (259), Expect = 1e-21
Identities = 45/69 (65%), Positives = 55/69 (79%)
Frame = -1
Query: 727 SALVQLIPCRAAVAPFSPIPPNEACCNALKSLGQPCLCVLVNGPPISGVDRNMASLLPEK 548
SAL+QL+PCR +VAPFS +PPN CC A+K+LGQPCLCVL GPPI GVDR +A LP K
Sbjct: 38 SALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPCLCVLAKGPPIVGVDRTLALHLPGK 97
Query: 547 CTTSFDPCD 521
C+ +F PC+
Sbjct: 98 CSANFLPCN 106
>ref|NP_199660.1| putative protein; protein id: At5g48490.1, supported by cDNA:
32925. [Arabidopsis thaliana] gi|8777379|dbj|BAA96969.1|
gene_id:MJE7.13~pir||S72530~similar to unknown protein
[Arabidopsis thaliana] gi|21592824|gb|AAM64774.1|
unknown [Arabidopsis thaliana]
Length = 101
Score = 48.5 bits (114), Expect = 9e-05
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = -1
Query: 715 QLIPCRAAVAPFSPIPPNEACCNALKSLGQPCLCVLVNGPPIS--GVDRNMASLLPEKCT 542
+L C AV+ +P P+ CCNALK CLC N P + GVD +AS LP++C
Sbjct: 35 ELNECLPAVSKNNPTSPSLLCCNALKHADYTCLCGYKNSPWLGSFGVDPKLASSLPKECD 94
Query: 541 TSFDP 527
+ P
Sbjct: 95 LTNAP 99
>gb|AAO22703.1| unknown protein [Arabidopsis thaliana]
Length = 100
Score = 48.5 bits (114), Expect = 9e-05
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = -1
Query: 715 QLIPCRAAVAPFSPIPPNEACCNALKSLGQPCLCVLVNGPPIS--GVDRNMASLLPEKCT 542
+L C AV+ +P P+ CCNALK CLC N P + GVD +AS LP++C
Sbjct: 34 ELNECLPAVSKNNPTSPSLLCCNALKHADYTCLCGYKNSPWLGSFGVDPKLASSLPKECD 93
Query: 541 TSFDP 527
+ P
Sbjct: 94 LTNAP 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,851,696
Number of Sequences: 1393205
Number of extensions: 10828779
Number of successful extensions: 18788
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 18320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18768
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
