Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019390A_C01 KMC019390A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF23363.1|AF135962_1 CAGL2 [Cucumis sativus] 176 2e-43
gb|AAL08423.2|AF185574_1 transcription factor MAGL4 [Populus tre... 175 4e-43
gb|AAM21342.1|AF373601_1 MADS-box protein 2 [Vitis vinifera] 174 8e-43
emb|CAD48303.1| MADS-box protein SEP1-a [Brassica oleracea var. ... 173 1e-42
pir||T17023 MADS box protein 1 - apple tree gi|3290209|gb|AAC259... 172 2e-42
>gb|AAF23363.1|AF135962_1 CAGL2 [Cucumis sativus]
Length = 246
Score = 176 bits (446), Expect = 2e-43
Identities = 87/93 (93%), Positives = 91/93 (97%)
Frame = +3
Query: 276 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSS 455
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS RGKLYEFCS+
Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
Query: 456 SSMVKTLERYQKCSYGAVEVNKPAKELESSYRE 554
S+M+KTLERYQKCSYGAVEV KPAKELESSYRE
Sbjct: 61 SNMLKTLERYQKCSYGAVEVTKPAKELESSYRE 93
>gb|AAL08423.2|AF185574_1 transcription factor MAGL4 [Populus tremuloides]
Length = 245
Score = 175 bits (443), Expect = 4e-43
Identities = 86/93 (92%), Positives = 91/93 (97%)
Frame = +3
Query: 276 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSS 455
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS RGKLYEFCS+
Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
Query: 456 SSMVKTLERYQKCSYGAVEVNKPAKELESSYRE 554
S+M+KTLERYQKCSYGA EVNKPAKELE+SYRE
Sbjct: 61 SNMLKTLERYQKCSYGAEEVNKPAKELENSYRE 93
>gb|AAM21342.1|AF373601_1 MADS-box protein 2 [Vitis vinifera]
Length = 244
Score = 174 bits (440), Expect = 8e-43
Identities = 88/94 (93%), Positives = 93/94 (98%), Gaps = 1/94 (1%)
Frame = +3
Query: 276 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSS 455
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSTRGKLYEFCSS
Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60
Query: 456 SSMVKTLERYQKCSYGAVEVNKPAKELE-SSYRE 554
SSM+KTLERYQKCSYGAVEV++P+KELE SSYRE
Sbjct: 61 SSMLKTLERYQKCSYGAVEVSRPSKELEQSSYRE 94
>emb|CAD48303.1| MADS-box protein SEP1-a [Brassica oleracea var. botrytis]
Length = 250
Score = 173 bits (438), Expect = 1e-42
Identities = 86/94 (91%), Positives = 92/94 (97%), Gaps = 1/94 (1%)
Frame = +3
Query: 276 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSS 455
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS RGKLYEFCSS
Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
Query: 456 SSMVKTLERYQKCSYGAVEV-NKPAKELESSYRE 554
S+M+KTLERYQKCSYG++EV NKPAKELE+SYRE
Sbjct: 61 SNMIKTLERYQKCSYGSIEVNNKPAKELENSYRE 94
>pir||T17023 MADS box protein 1 - apple tree gi|3290209|gb|AAC25922.1| MADS-box
protein 1 [Malus x domestica]
Length = 246
Score = 172 bits (437), Expect = 2e-42
Identities = 87/94 (92%), Positives = 92/94 (97%), Gaps = 1/94 (1%)
Frame = +3
Query: 276 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSS 455
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS RGKLYEFCSS
Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
Query: 456 SSMVKTLERYQKCSYGAV-EVNKPAKELESSYRE 554
SSM+KTL+RYQKCSYGAV +VN+PAKELESSYRE
Sbjct: 61 SSMLKTLDRYQKCSYGAVDQVNRPAKELESSYRE 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,420,234
Number of Sequences: 1393205
Number of extensions: 9653266
Number of successful extensions: 40699
Number of sequences better than 10.0: 998
Number of HSP's better than 10.0 without gapping: 36712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40339
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
