Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019383A_C01 KMC019383A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181812.1| En/Spm-like transposon protein; protein id: At2... 189 2e-47
dbj|BAB90075.1| VsaA -like protein [Oryza sativa (japonica culti... 144 8e-34
dbj|BAB32984.1| P0489A05.4 [Oryza sativa (japonica cultivar-grou... 106 3e-22
gb|AAM64424.1| unknown [Arabidopsis thaliana] 41 0.010
ref|NP_565474.1| Expressed protein; protein id: At2g20515.1, sup... 41 0.010
>ref|NP_181812.1| En/Spm-like transposon protein; protein id: At2g42840.1, supported
by cDNA: 41214. [Arabidopsis thaliana]
gi|25456394|pir||T52305 En/Spm-like transposon protein
[imported] - Arabidopsis thaliana
gi|4512671|gb|AAD21725.1| En/Spm-like transposon protein
[Arabidopsis thaliana]
gi|4929128|gb|AAD33868.1|AF141375_1 protodermal factor 1
[Arabidopsis thaliana]
gi|4929130|gb|AAD33869.1|AF141376_1 protodermal factor 1
[Arabidopsis thaliana] gi|21593673|gb|AAM65640.1|
En/Spm-like transposon protein [Arabidopsis thaliana]
Length = 306
Score = 189 bits (480), Expect = 2e-47
Identities = 92/143 (64%), Positives = 109/143 (75%), Gaps = 5/143 (3%)
Frame = -2
Query: 591 PPSTPIDXGTPTISTPPFLPAP-SPFTGTCNYWNTHPGIIWGLLGWWGTLGNTFGA---- 427
PP+ ID GTP PF+PAP P TGTC+YW HP +IWGLLGWWGT+G FG
Sbjct: 166 PPTPIIDPGTPGT---PFIPAPFPPITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIP 222
Query: 426 SSFPGYGAGLSLPQALSNTRTDGLGALYREGAASYLNSLVNKKFPYTTQQVRERFVASLS 247
SS PG+ ++L QALSNTR+D +GALYREG AS+LNS+VN KFP+TT QVR+ FVA LS
Sbjct: 223 SSIPGFDPHMNLLQALSNTRSDPIGALYREGTASWLNSMVNHKFPFTTPQVRDHFVAGLS 282
Query: 246 SNKAATTQAHLFRMANEGRIKPR 178
SNKAAT QAH F++ANEGR+KPR
Sbjct: 283 SNKAATKQAHTFKLANEGRLKPR 305
>dbj|BAB90075.1| VsaA -like protein [Oryza sativa (japonica cultivar-group)]
Length = 647
Score = 144 bits (363), Expect = 8e-34
Identities = 70/142 (49%), Positives = 94/142 (65%), Gaps = 7/142 (4%)
Frame = -2
Query: 591 PPSTPIDXGTPTISTPPFLPAPSPFTGT-----CNYWNTHPGIIWGLLGWWGTLGNTFGA 427
P STP +P + TPP P PF C+YW +HPG+IWGL G+W + FG
Sbjct: 504 PISTPSSPYSPLVPTPPSSTTPMPFDPNTAPFPCSYWLSHPGVIWGLFGFWCPMARLFGP 563
Query: 426 SSFPGYGAGLSLPQALSNTRTDGLGALYREGAASYLNSLVNKKFPYTTQQVRERFVASLS 247
++ +G L++P+AL+NTR DG+G LYREG AS LNS+VN +FP+TTQQV++ F A+LS
Sbjct: 564 TAAAPFGHDLTVPEALANTRADGVGELYREGTASLLNSMVNSRFPFTTQQVKDAFSAALS 623
Query: 246 S--NKAATTQAHLFRMANEGRI 187
S + AA QA LF+ ANEG +
Sbjct: 624 SGGDHAAAAQAQLFKKANEGHV 645
>dbj|BAB32984.1| P0489A05.4 [Oryza sativa (japonica cultivar-group)]
gi|20804531|dbj|BAB92225.1| B1015E06.26 [Oryza sativa
(japonica cultivar-group)]
Length = 601
Score = 106 bits (264), Expect = 3e-22
Identities = 62/136 (45%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Frame = -2
Query: 588 PSTPIDX-GTPTISTPPFLPAPSPFTGTCNYWNTHPGIIWGLLGWW-GTLGNTFGASSFP 415
P+TP G I T P GTC+YW +HP +W LG W ++G+ FG+ S
Sbjct: 473 PATPASHDGHGLIPTTP---------GTCDYWRSHPMEMWSALGRWPSSVGHFFGSGS-G 522
Query: 414 GYGAGLSLPQALSNTRTDGLGALYREGAASYLNSLVNKKFPYTTQQVRERFVASL--SSN 241
G G G+S+ AL+NTR DG G L REGAA+ LNS+ FPYT +QVR+ F A+ S+
Sbjct: 523 GAGTGMSIQDALANTRGDGAGELMREGAAALLNSMTRSGFPYTAEQVRDAFAAAAGGGSD 582
Query: 240 KAATTQAHLFRMANEG 193
AA QA F+ ANEG
Sbjct: 583 GAAAAQAAAFKKANEG 598
>gb|AAM64424.1| unknown [Arabidopsis thaliana]
Length = 152
Score = 41.2 bits (95), Expect = 0.010
Identities = 31/126 (24%), Positives = 57/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 567 GTPTISTPPFLPAPSPFTGTCNYWNTHPGIIWGLLGWWGTLGNTFGAS-SFPGYGAGLSL 391
G + + P F+ T YW++ ++ T+ FG + + + L+L
Sbjct: 23 GDSSATRPGFIYTRHRGRCTPQYWSSQREAWPRMVPERSTVEKIFGVMVAKERWRSDLTL 82
Query: 390 PQALSNTRTDG--LGALYREGAASYLNSLVNKKFPYTTQQVRERFVASLSSNKAATTQAH 217
++ + +G GAL ++G A+ +NS K F Y +V+ + ++ S AA QA
Sbjct: 83 VESTARNDEEGNAYGALLKQGIAALINSYARKSFSYAPWEVKTMLIQAMVSESAARRQAE 142
Query: 216 LFRMAN 199
F +AN
Sbjct: 143 HFAVAN 148
>ref|NP_565474.1| Expressed protein; protein id: At2g20515.1, supported by cDNA:
24343. [Arabidopsis thaliana] gi|20198088|gb|AAM15393.1|
Expressed protein [Arabidopsis thaliana]
Length = 155
Score = 41.2 bits (95), Expect = 0.010
Identities = 31/126 (24%), Positives = 57/126 (44%), Gaps = 3/126 (2%)
Frame = -2
Query: 567 GTPTISTPPFLPAPSPFTGTCNYWNTHPGIIWGLLGWWGTLGNTFGAS-SFPGYGAGLSL 391
G + + P F+ T YW++ ++ T+ FG + + + L+L
Sbjct: 26 GDSSATRPGFIYTRHRGRCTPQYWSSQREAWPRMVPERSTVEKIFGVMVAKERWRSDLTL 85
Query: 390 PQALSNTRTDG--LGALYREGAASYLNSLVNKKFPYTTQQVRERFVASLSSNKAATTQAH 217
++ + +G GAL ++G A+ +NS K F Y +V+ + ++ S AA QA
Sbjct: 86 VESTARNDEEGNAYGALLKQGIAALINSYARKSFSYAPWEVKTMLIQAMVSESAARRQAE 145
Query: 216 LFRMAN 199
F +AN
Sbjct: 146 HFAVAN 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,063,599
Number of Sequences: 1393205
Number of extensions: 13189279
Number of successful extensions: 50460
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 44918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50104
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
