Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019378A_C01 KMC019378A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190937.1| putative protein; protein id: At3g53690.1, supp... 113 2e-24
gb|AAO37196.1| hypothetical protein [Arabidopsis thaliana] 104 8e-22
dbj|BAB01031.1| emb|CAB67676.1~gene_id:MLN21.3~similar to unknow... 102 2e-21
ref|NP_193702.1| putative protein; protein id: At4g19670.1 [Arab... 98 8e-20
ref|NP_190133.1| putative protein; protein id: At3g45470.1 [Arab... 94 8e-19
>ref|NP_190937.1| putative protein; protein id: At3g53690.1, supported by cDNA:
108517. [Arabidopsis thaliana] gi|11357799|pir||T45909
hypothetical protein F4P12.390 - Arabidopsis thaliana
gi|6729520|emb|CAB67676.1| putative protein [Arabidopsis
thaliana] gi|21536688|gb|AAM61020.1| unknown
[Arabidopsis thaliana]
Length = 320
Score = 113 bits (282), Expect = 2e-24
Identities = 46/96 (47%), Positives = 62/96 (63%), Gaps = 2/96 (2%)
Frame = -3
Query: 547 NAECPSCHRLFCAQCMVPWHAGMNCEEFQK-SGRVKGEEDLEKKFLKLAKRKKWQRCPKC 371
++ECP CHR+ C +C WH M CEEFQK + +G +D+ +AK+KKW+RCP C
Sbjct: 222 DSECPHCHRMVCVECGTQWHPEMTCEEFQKLAANERGRDDI--LLATMAKQKKWKRCPSC 279
Query: 370 SFYVQRRSGCEHMKCRCGCNFCYECGKDWK-HGHIC 266
FY+++ GC +MKCRCG FCY CG + H H C
Sbjct: 280 KFYIEKSQGCLYMKCRCGLAFCYNCGTPSRDHTHYC 315
>gb|AAO37196.1| hypothetical protein [Arabidopsis thaliana]
Length = 132
Score = 104 bits (259), Expect = 8e-22
Identities = 45/95 (47%), Positives = 58/95 (60%), Gaps = 2/95 (2%)
Frame = -3
Query: 544 AECPSCHRLFCAQCMVPWHAGMNCEEFQKSGRVKGEE-DLEKKFLKLAKRKKWQRCPKCS 368
+ECP CHR+ +C WH + CEEFQK + E D+ K +A+ KKW+RCP C
Sbjct: 30 SECPHCHRMVSVECGTKWHPEITCEEFQKLAENERERGDILLK--NMAESKKWRRCPSCK 87
Query: 367 FYVQRRSGCEHMKCRCGCNFCYECGKDWK-HGHIC 266
FY+++ GC +MKCRCG FCY CG K H H C
Sbjct: 88 FYIEKSEGCLYMKCRCGLXFCYNCGTPSKXHTHYC 122
>dbj|BAB01031.1| emb|CAB67676.1~gene_id:MLN21.3~similar to unknown protein
[Arabidopsis thaliana]
Length = 319
Score = 102 bits (255), Expect = 2e-21
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Frame = -3
Query: 550 TNAECPSCHRLFCAQCMVPWHAGMNCEEFQKSG--RVKGEEDLEKKFLKLAKRKKWQRCP 377
T EC SCHRLFC QC V WHAG+ C+EFQ+ G + K ++ + +++AK K+W+RCP
Sbjct: 203 TQTECRSCHRLFCVQCKVTWHAGIGCDEFQRFGNTKKKSSDEDDALLIQMAKNKQWRRCP 262
Query: 376 KCSFYVQRRSGCEHMKCR 323
C FYV + GC+H+KCR
Sbjct: 263 SCKFYVDKVEGCQHIKCR 280
>ref|NP_193702.1| putative protein; protein id: At4g19670.1 [Arabidopsis thaliana]
gi|7487075|pir||T04748 hypothetical protein T16H5.30 -
Arabidopsis thaliana gi|3250676|emb|CAA19684.1| putative
protein [Arabidopsis thaliana]
gi|7268763|emb|CAB78969.1| putative protein [Arabidopsis
thaliana]
Length = 532
Score = 97.8 bits (242), Expect = 8e-20
Identities = 40/89 (44%), Positives = 53/89 (58%)
Frame = -3
Query: 541 ECPSCHRLFCAQCMVPWHAGMNCEEFQKSGRVKGEEDLEKKFLKLAKRKKWQRCPKCSFY 362
ECP C R C C VPWHA M+CEEFQ + D + +LA+ K+W+RC +C
Sbjct: 326 ECPVCERFVCVDCGVPWHASMSCEEFQILPVDERYPD-DITLHRLARYKRWRRCQQCRIM 384
Query: 361 VQRRSGCEHMKCRCGCNFCYECGKDWKHG 275
++ GC HM CRCG FCY CG +++ G
Sbjct: 385 IELAQGCNHMTCRCGHEFCYSCGAEYREG 413
>ref|NP_190133.1| putative protein; protein id: At3g45470.1 [Arabidopsis thaliana]
gi|11357929|pir||T47487 hypothetical protein F9K21.50 -
Arabidopsis thaliana gi|6996250|emb|CAB75476.1| putative
protein [Arabidopsis thaliana]
Length = 222
Score = 94.4 bits (233), Expect = 8e-19
Identities = 38/90 (42%), Positives = 52/90 (57%)
Frame = -3
Query: 538 CPSCHRLFCAQCMVPWHAGMNCEEFQKSGRVKGEEDLEKKFLKLAKRKKWQRCPKCSFYV 359
C C L C C VPWH+ ++C E++K +DL K L A +KW++C KC +
Sbjct: 117 CIKCSGLVCIDCKVPWHSDLSCAEYKKLHPDPVLDDLTLKLL--ANDQKWRQCVKCRHLI 174
Query: 358 QRRSGCEHMKCRCGCNFCYECGKDWKHGHI 269
+ GC HM CRCG FCY+CG +WK G +
Sbjct: 175 ELNQGCNHMTCRCGYQFCYKCGVEWKKGQV 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,703,460
Number of Sequences: 1393205
Number of extensions: 11432767
Number of successful extensions: 33576
Number of sequences better than 10.0: 272
Number of HSP's better than 10.0 without gapping: 30955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33215
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
