Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019359A_C01 KMC019359A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568570.1| putative protein; protein id: At5g39760.1, supp... 104 8e-22
gb|AAM64462.1| unknown [Arabidopsis thaliana] 104 1e-21
emb|CAC34409.1| ZF-HD homeobox protein [Flaveria bidentis] 97 1e-19
emb|CAC34410.1| ZF-HD homeobox protein [Flaveria bidentis] 93 3e-18
ref|NP_189534.1| unknown protein; protein id: At3g28920.1, suppo... 90 3e-17
>ref|NP_568570.1| putative protein; protein id: At5g39760.1, supported by cDNA:
249321., supported by cDNA: gi_20259469 [Arabidopsis
thaliana] gi|10177976|dbj|BAB11382.1|
gene_id:MKM21.8~pir||T00609~similar to unknown protein
[Arabidopsis thaliana] gi|20259470|gb|AAM13855.1|
unknown protein [Arabidopsis thaliana]
gi|21436443|gb|AAM51422.1| unknown protein [Arabidopsis
thaliana]
Length = 334
Score = 104 bits (260), Expect = 8e-22
Identities = 64/141 (45%), Positives = 78/141 (54%), Gaps = 14/141 (9%)
Frame = -3
Query: 611 EKMLKFAERVGWKMQKKDEDFVQDFCNEIGIERGVLKVWMHNNKNTFGKRD-GSNEINNN 435
EKM +FAERVGWKMQK+DED V+DFC +IG+++ VLKVWMHNNKNTF +RD NEI
Sbjct: 213 EKMHEFAERVGWKMQKRDEDDVRDFCRQIGVDKSVLKVWMHNNKNTFNRRDIAGNEI--- 269
Query: 434 NINNNINNAGSAKSFFAKENHDPVITNISSASEINGNGNRNHGAEDPIHHH--------- 282
I+N G NH P++ A EIN + N +HG H
Sbjct: 270 ---RQIDNGGG--------NHTPIL-----AGEINNHNNGHHGVGGGGELHQSVSSGGGG 313
Query: 281 --FQNDGGAT--VRANGSSSS 231
F +D G NGSSSS
Sbjct: 314 GGFDSDSGGANGGNVNGSSSS 334
>gb|AAM64462.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 104 bits (259), Expect = 1e-21
Identities = 63/141 (44%), Positives = 78/141 (54%), Gaps = 14/141 (9%)
Frame = -3
Query: 611 EKMLKFAERVGWKMQKKDEDFVQDFCNEIGIERGVLKVWMHNNKNTFGKRD-GSNEINNN 435
EKM +FAERVGWKMQK+D+D V+DFC +IG+++ VLKVWMHNNKNTF +RD NEI
Sbjct: 212 EKMHEFAERVGWKMQKRDZDDVRDFCRQIGVDKSVLKVWMHNNKNTFNRRDIAGNEI--- 268
Query: 434 NINNNINNAGSAKSFFAKENHDPVITNISSASEINGNGNRNHGAEDPIHHH--------- 282
I+N G NH P++ A EIN + N +HG H
Sbjct: 269 ---RQIDNGGG--------NHTPIL-----AGEINNHNNGHHGVGGGGELHQSVSSGGGG 312
Query: 281 --FQNDGGAT--VRANGSSSS 231
F +D G NGSSSS
Sbjct: 313 GGFDSDSGGANGGNVNGSSSS 333
>emb|CAC34409.1| ZF-HD homeobox protein [Flaveria bidentis]
Length = 339
Score = 97.4 bits (241), Expect = 1e-19
Identities = 55/128 (42%), Positives = 68/128 (52%), Gaps = 1/128 (0%)
Frame = -3
Query: 611 EKMLKFAERVGWKMQKKDEDFVQDFCNEIGIERGVLKVWMHNNKNTF-GKRDGSNEINNN 435
EKM + AERVGWKMQKKDED + FCNEIG+++GV KVWMHNNK TF GK+D N + N
Sbjct: 233 EKMHELAERVGWKMQKKDEDLIIGFCNEIGVDKGVFKVWMHNNKMTFGGKKDSDNHLAGN 292
Query: 434 NINNNINNAGSAKSFFAKENHDPVITNISSASEINGNGNRNHGAEDPIHHHFQNDGGATV 255
++G FF + NH + N + G GG +
Sbjct: 293 ------GSSGGGLDFFNRNNHQQ-----QQQQQPQNNDSVTSGG-----------GGNAI 330
Query: 254 RANGSSSS 231
NGSSSS
Sbjct: 331 GTNGSSSS 338
>emb|CAC34410.1| ZF-HD homeobox protein [Flaveria bidentis]
Length = 259
Score = 92.8 bits (229), Expect = 3e-18
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Frame = -3
Query: 611 EKMLKFAERVGWKMQKKDEDFVQDFCNEIGIERGVLKVWMHNNKNT-FGKRDGSNEINNN 435
+KM + AERVGWKMQKKDED + +FCNEIG+++GV KVWMHNNK T GK+D ++++ ++
Sbjct: 143 QKMHELAERVGWKMQKKDEDLIINFCNEIGVDKGVFKVWMHNNKMTSAGKKDSAHQLVDS 202
Query: 434 NINNNINNAGSAKSFFAKENHDPVITNISSASEINGNGNRNHGAEDPIHHHFQNDGGATV 255
++ G F N+ + ++ S +G G G D GG +
Sbjct: 203 G-SSGAGGGGGGGDFLMSRNYHHLQQQQNNDSGSSGGGG---GGGD--------GGGDVI 250
Query: 254 RANGSSSS 231
NGSSSS
Sbjct: 251 GTNGSSSS 258
>ref|NP_189534.1| unknown protein; protein id: At3g28920.1, supported by cDNA:
gi_20260543 [Arabidopsis thaliana]
gi|9294358|dbj|BAB02255.1| contains similarity to
unknown protein~gb|AAF24606.1~gene_id:MYI13.1
[Arabidopsis thaliana] gi|20260544|gb|AAM13170.1|
unknown protein [Arabidopsis thaliana]
gi|22136284|gb|AAM91220.1| unknown protein [Arabidopsis
thaliana]
Length = 312
Score = 89.7 bits (221), Expect = 3e-17
Identities = 54/126 (42%), Positives = 69/126 (53%)
Frame = -3
Query: 611 EKMLKFAERVGWKMQKKDEDFVQDFCNEIGIERGVLKVWMHNNKNTFGKRDGSNEINNNN 432
EKM +FA+R+GWK+QK+DED V+DFC EIG+++GVLKVWMHNNKN+F G
Sbjct: 205 EKMHEFADRIGWKIQKRDEDEVRDFCREIGVDKGVLKVWMHNNKNSFKFSGG----GATT 260
Query: 431 INNNINNAGSAKSFFAKENHDPVITNISSASEINGNGNRNHGAEDPIHHHFQNDGGATVR 252
+ N N G S N D V A++ +G G R DGG V
Sbjct: 261 VQRNDNGIGGENS-----NDDGV---RGLANDGDGGGGRFESDSGGA------DGGGNVN 306
Query: 251 ANGSSS 234
A+ SSS
Sbjct: 307 ASSSSS 312
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,051,276
Number of Sequences: 1393205
Number of extensions: 11198044
Number of successful extensions: 193751
Number of sequences better than 10.0: 1816
Number of HSP's better than 10.0 without gapping: 45285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103417
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
