Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019315A_C01 KMC019315A_c01
(805 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567209.1| expressed protein; protein id: At4g01050.1, sup... 305 7e-82
pir||T01733 hypothetical protein A_IG002N01.31 - Arabidopsis tha... 305 7e-82
pir||H85013 hypothetical protein AT4g01050 [imported] - Arabidop... 305 7e-82
dbj|BAB92649.1| B1099D03.26 [Oryza sativa (japonica cultivar-gro... 113 3e-24
gb|AAM65517.1| unknown [Arabidopsis thaliana] 100 2e-20
>ref|NP_567209.1| expressed protein; protein id: At4g01050.1, supported by cDNA:
gi_15982914, supported by cDNA: gi_16323193 [Arabidopsis
thaliana] gi|15982915|gb|AAL09804.1| AT4g01050/F2N1_31
[Arabidopsis thaliana] gi|16323194|gb|AAL15331.1|
AT4g01050/F2N1_31 [Arabidopsis thaliana]
gi|21700911|gb|AAM70579.1| AT4g01050/F2N1_31
[Arabidopsis thaliana]
Length = 466
Score = 305 bits (780), Expect = 7e-82
Identities = 162/265 (61%), Positives = 194/265 (73%), Gaps = 3/265 (1%)
Frame = +1
Query: 19 MEXLNAAGLTPLSVLSDARKQPRKFSSHPTISACKVSNFSTSNTKKRTFQECLSTGLHGG 198
ME L A +P+SVLS+ R +PRK S P N +++ QE +GG
Sbjct: 1 MEALKTATFSPMSVLSEKRSEPRKPFSLP--------NLFPPKSQRPISQESFLKRFNGG 52
Query: 199 LILAASVVNSGIA--KALTYEEALGQSMNPKISNSGDFDANGFVESVASFAGENPAVVAG 372
L L SV++S A K+LTYEEAL QSM + S FD++G +E +++F +NP V+AG
Sbjct: 53 LALLTSVLSSATAPAKSLTYEEALQQSM----TTSSSFDSDGLIEGISNFVTDNPLVIAG 108
Query: 373 GVAILAVPLVLSQVL-KKPKAWGVESAKNAYVKLGADGSAQLLDIRAPVEIRQVGTPDVG 549
GVA LAVP VLSQVL KKPK+WGVESAKNAY KLG D +AQLLDIRA + RQVG+P++
Sbjct: 109 GVAALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIK 168
Query: 550 GLKKKPVAIAYKGDDKPGFLKKLSLKFKEPENTTLFVLDKFDGNSELVAELVTLNGFKAA 729
GL KK V+ Y G+DKPGFLKKLSLKFK+PENTTL++LDKFDGNSELVAELV LNGFK+A
Sbjct: 169 GLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSA 228
Query: 730 YAIKDGAEGPRGWTNSGLPWIAPKK 804
YAIKDGAEGPRGW NS LPWI PKK
Sbjct: 229 YAIKDGAEGPRGWLNSSLPWIEPKK 253
>pir||T01733 hypothetical protein A_IG002N01.31 - Arabidopsis thaliana
gi|2191152|gb|AAB61039.1| A_IG002N01.31 gene product
[Arabidopsis thaliana]
Length = 968
Score = 305 bits (780), Expect = 7e-82
Identities = 162/265 (61%), Positives = 194/265 (73%), Gaps = 3/265 (1%)
Frame = +1
Query: 19 MEXLNAAGLTPLSVLSDARKQPRKFSSHPTISACKVSNFSTSNTKKRTFQECLSTGLHGG 198
ME L A +P+SVLS+ R +PRK S P N +++ QE +GG
Sbjct: 511 MEALKTATFSPMSVLSEKRSEPRKPFSLP--------NLFPPKSQRPISQESFLKRFNGG 562
Query: 199 LILAASVVNSGIA--KALTYEEALGQSMNPKISNSGDFDANGFVESVASFAGENPAVVAG 372
L L SV++S A K+LTYEEAL QSM + S FD++G +E +++F +NP V+AG
Sbjct: 563 LALLTSVLSSATAPAKSLTYEEALQQSM----TTSSSFDSDGLIEGISNFVTDNPLVIAG 618
Query: 373 GVAILAVPLVLSQVL-KKPKAWGVESAKNAYVKLGADGSAQLLDIRAPVEIRQVGTPDVG 549
GVA LAVP VLSQVL KKPK+WGVESAKNAY KLG D +AQLLDIRA + RQVG+P++
Sbjct: 619 GVAALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIK 678
Query: 550 GLKKKPVAIAYKGDDKPGFLKKLSLKFKEPENTTLFVLDKFDGNSELVAELVTLNGFKAA 729
GL KK V+ Y G+DKPGFLKKLSLKFK+PENTTL++LDKFDGNSELVAELV LNGFK+A
Sbjct: 679 GLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSA 738
Query: 730 YAIKDGAEGPRGWTNSGLPWIAPKK 804
YAIKDGAEGPRGW NS LPWI PKK
Sbjct: 739 YAIKDGAEGPRGWLNSSLPWIEPKK 763
>pir||H85013 hypothetical protein AT4g01050 [imported] - Arabidopsis thaliana
gi|7267602|emb|CAB80914.1| hypothetical protein
[Arabidopsis thaliana]
Length = 457
Score = 305 bits (780), Expect = 7e-82
Identities = 162/265 (61%), Positives = 194/265 (73%), Gaps = 3/265 (1%)
Frame = +1
Query: 19 MEXLNAAGLTPLSVLSDARKQPRKFSSHPTISACKVSNFSTSNTKKRTFQECLSTGLHGG 198
ME L A +P+SVLS+ R +PRK S P N +++ QE +GG
Sbjct: 42 MEALKTATFSPMSVLSEKRSEPRKPFSLP--------NLFPPKSQRPISQESFLKRFNGG 93
Query: 199 LILAASVVNSGIA--KALTYEEALGQSMNPKISNSGDFDANGFVESVASFAGENPAVVAG 372
L L SV++S A K+LTYEEAL QSM + S FD++G +E +++F +NP V+AG
Sbjct: 94 LALLTSVLSSATAPAKSLTYEEALQQSM----TTSSSFDSDGLIEGISNFVTDNPLVIAG 149
Query: 373 GVAILAVPLVLSQVL-KKPKAWGVESAKNAYVKLGADGSAQLLDIRAPVEIRQVGTPDVG 549
GVA LAVP VLSQVL KKPK+WGVESAKNAY KLG D +AQLLDIRA + RQVG+P++
Sbjct: 150 GVAALAVPFVLSQVLNKKPKSWGVESAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIK 209
Query: 550 GLKKKPVAIAYKGDDKPGFLKKLSLKFKEPENTTLFVLDKFDGNSELVAELVTLNGFKAA 729
GL KK V+ Y G+DKPGFLKKLSLKFK+PENTTL++LDKFDGNSELVAELV LNGFK+A
Sbjct: 210 GLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSA 269
Query: 730 YAIKDGAEGPRGWTNSGLPWIAPKK 804
YAIKDGAEGPRGW NS LPWI PKK
Sbjct: 270 YAIKDGAEGPRGWLNSSLPWIEPKK 294
>dbj|BAB92649.1| B1099D03.26 [Oryza sativa (japonica cultivar-group)]
Length = 264
Score = 113 bits (283), Expect = 3e-24
Identities = 67/159 (42%), Positives = 94/159 (58%), Gaps = 2/159 (1%)
Frame = +1
Query: 298 GDFDANGFVESVASFAGENPAVVAGGVAI--LAVPLVLSQVLKKPKAWGVESAKNAYVKL 471
G V ++ F NP VAG V + +A+PLV + KK KA SA +A+ KL
Sbjct: 100 GKVSLESIVVAIDDFNNRNPFFVAGAVFVWLVAIPLV-QEYFKKYKA---VSAIDAFRKL 155
Query: 472 GADGSAQLLDIRAPVEIRQVGTPDVGGLKKKPVAIAYKGDDKPGFLKKLSLKFKEPENTT 651
+ AQLLDIR +R + +P++ ++K V + + +D+ GF+K++ +F +P NT
Sbjct: 156 RDEPGAQLLDIRRGKSVRFMASPNLRLVEKSAVQVEFDEEDEEGFVKEVLARFPDPANTV 215
Query: 652 LFVLDKFDGNSELVAELVTLNGFKAAYAIKDGAEGPRGW 768
+ VLD FDGNS VAEL+ NGFK AYAIK G GP GW
Sbjct: 216 VCVLDNFDGNSMKVAELLFNNGFKEAYAIKGGLRGPEGW 254
>gb|AAM65517.1| unknown [Arabidopsis thaliana]
Length = 264
Score = 100 bits (250), Expect = 2e-20
Identities = 60/159 (37%), Positives = 87/159 (53%)
Frame = +1
Query: 292 NSGDFDANGFVESVASFAGENPAVVAGGVAILAVPLVLSQVLKKPKAWGVESAKNAYVKL 471
+SG D+ + ++ +F + P VAG V V V+ + + SA NA+ KL
Sbjct: 73 SSGKIDSESILVTIDNFFNKYPFFVAGCTFTYLV--VYPAVMFYLRKYKPISAMNAFRKL 130
Query: 472 GADGSAQLLDIRAPVEIRQVGTPDVGGLKKKPVAIAYKGDDKPGFLKKLSLKFKEPENTT 651
+ +QLLDIR + + +P++ L K V + + +D+ GFL K+ F + ENT
Sbjct: 131 KNESDSQLLDIRDVKTLALLASPNLKFLGKSSVQVPFSENDEEGFLTKVKGSFSDAENTV 190
Query: 652 LFVLDKFDGNSELVAELVTLNGFKAAYAIKDGAEGPRGW 768
+ VLD FDGNS VAEL+ NGFK AY I+ GA G GW
Sbjct: 191 VCVLDNFDGNSSKVAELLIKNGFKEAYYIRGGARGKNGW 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.313 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 758,262,266
Number of Sequences: 1393205
Number of extensions: 18081287
Number of successful extensions: 81661
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 66524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80168
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
