Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019311A_C01 KMC019311A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_212404.1| flagellar-associated GTP-binding protein (flhF)... 34 1.1
gb|AAB58973.1| putative 34 1.1
gb|AAD03252.1| translation elongation factor 1-alpha [Blepharism... 33 1.9
ref|NP_389715.1| peptide synthetase [Bacillus subtilis] gi|73036... 33 2.5
ref|XP_152976.1| hypothetical protein XP_152976 [Mus musculus] 32 4.2
>ref|NP_212404.1| flagellar-associated GTP-binding protein (flhF) [Borrelia
burgdorferi] gi|3913665|sp|Q44758|FLHF_BORBU Flagellar
biosynthesis protein flhF (Flagella associated
GTP-binding protein) gi|7463185|pir||F70133
flagellar-associated GTP-binding protein (flhF) homolog
- Lyme disease spirochete gi|1165255|gb|AAA85594.1| FlhF
gi|2688196|gb|AAC66678.1| flagellar-associated
GTP-binding protein (flhF) [Borrelia burgdorferi B31]
Length = 388
Score = 34.3 bits (77), Expect = 1.1
Identities = 20/64 (31%), Positives = 32/64 (49%)
Frame = -2
Query: 531 LSNAIKNVQIELQKVEDSLPNYNGKSLEDIVNGVLSFNVVMDHALEDVDGTIKHMVLRKI 352
+ N NV+ E +K+ S+ S+ED++ V S + H E+ I H + KI
Sbjct: 59 IGNQQINVEDEKRKILQSIKREENSSIEDVLKEVKSLKTELAHKKEN----INHPTITKI 114
Query: 351 EDIV 340
EDI+
Sbjct: 115 EDIL 118
>gb|AAB58973.1| putative
Length = 387
Score = 34.3 bits (77), Expect = 1.1
Identities = 20/64 (31%), Positives = 32/64 (49%)
Frame = -2
Query: 531 LSNAIKNVQIELQKVEDSLPNYNGKSLEDIVNGVLSFNVVMDHALEDVDGTIKHMVLRKI 352
+ N NV+ E +K+ S+ S+ED++ V S + H E+ I H + KI
Sbjct: 58 IGNQQINVEDEKRKILQSIKREENSSIEDVLKEVKSLKTELAHKKEN----INHPTITKI 113
Query: 351 EDIV 340
EDI+
Sbjct: 114 EDIL 117
>gb|AAD03252.1| translation elongation factor 1-alpha [Blepharisma japonicum]
Length = 411
Score = 33.5 bits (75), Expect = 1.9
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Frame = -2
Query: 534 GLSNAIKNVQIELQKVEDSLP------NYNGKSLEDIVNGVLSFNVVMDHALEDVDGTIK 373
G+S +K+V++ + +E++LP N S++DI G ++ + D A E++D T +
Sbjct: 259 GISTEVKSVEMHHESLEEALPGDNVGFNVKNLSVKDIKRGYVASDSRSDPAKEEIDFTAQ 318
Query: 372 HMVL 361
++L
Sbjct: 319 VIIL 322
>ref|NP_389715.1| peptide synthetase [Bacillus subtilis] gi|730367|sp|P39846|PPS2_BACSU
Peptide synthetase 2 gi|2127164|pir||I40457 peptide
synthetase ppsB - Bacillus subtilis
gi|509469|emb|CAA84361.1| peptide synthetase ORF2
[Bacillus subtilis] gi|2634216|emb|CAB13716.1| peptide
synthetase [Bacillus subtilis subsp. subtilis str. 168]
Length = 2560
Score = 33.1 bits (74), Expect = 2.5
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = -2
Query: 561 KNKDVQYLGGLSNAIKNVQIELQKVEDSLPNYNGKSLEDIVNGVLSFNVVMDHALEDVDG 382
K ++ +LG L ++ +++ L K LP++ G ++E ++ ++ + H L G
Sbjct: 1230 KKQEAYWLGQLGGSLPTLELPLDKTRPRLPDFRGGTIEVNIDKDMADEL---HRLMAETG 1286
Query: 381 TIKHMVLRKIEDIVL 337
T +M+L + I+L
Sbjct: 1287 TTLYMILLAVYSILL 1301
>ref|XP_152976.1| hypothetical protein XP_152976 [Mus musculus]
Length = 210
Score = 32.3 bits (72), Expect = 4.2
Identities = 26/97 (26%), Positives = 35/97 (35%)
Frame = -2
Query: 480 SLPNYNGKSLEDIVNGVLSFNVVMDHALEDVDGTIKHMVLRKIEDIVLLTNDVIFHVALL 301
SLP +ED NG N + H + + + ++ KIED VLL +F
Sbjct: 42 SLPGEARSVMEDPANGRAQDNHIEGHLISEAISSFLALLFPKIEDRVLLKGSSLFK---- 97
Query: 300 Q*TLDAIMVTWKP*SDQCISNQDTVILNNKAWYS*AC 190
W DQC Q+ V W S C
Sbjct: 98 ---------PWHHNRDQCCCQQNPV---ENRWMSCPC 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,644,078
Number of Sequences: 1393205
Number of extensions: 9777457
Number of successful extensions: 21402
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21379
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
