Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019275A_C02 KMC019275A_c02
(742 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189269.1| glycosyl hydrolase family 27 (alpha-galactosida... 187 1e-46
dbj|BAB02198.1| contains similarity to alpha galactosidase~gene_... 187 1e-46
dbj|BAB91950.1| B1003B09.4 [Oryza sativa (japonica cultivar-group)] 67 2e-10
ref|NP_242736.1| BH1870~unknown conserved protein in others [Bac... 66 6e-10
ref|ZP_00121337.1| hypothetical protein [Bifidobacterium longum ... 62 1e-08
>ref|NP_189269.1| glycosyl hydrolase family 27 (alpha-galactosidase/melibiase);
protein id: At3g26380.1 [Arabidopsis thaliana]
Length = 512
Score = 187 bits (475), Expect = 1e-46
Identities = 90/173 (52%), Positives = 119/173 (68%), Gaps = 4/173 (2%)
Frame = +1
Query: 19 GGKGLKGSSWPDLDMLPFGWLTDPGSNDGPHRFSNLNLEEKRTQMTLWALAKSPLMFGGD 198
G +GL+G SWPDLDMLP GWLTD GSN GPHR NLNLEE+++QMTLW++AKSPLMFGGD
Sbjct: 172 GARGLQGKSWPDLDMLPLGWLTDQGSNVGPHRACNLNLEEQKSQMTLWSIAKSPLMFGGD 231
Query: 199 VRKIDPPTYEIITNPTLLEINYFSSNNMEFPYVTSPKNLKHGHQ----HPEEKERRSKKG 366
VR +D TY +ITNPTLLEIN +SSNN EFPY+T+ + ++ H+ HP K +K
Sbjct: 232 VRNLDATTYNLITNPTLLEINSYSSNNKEFPYITATRVSRNKHKGYPHHPTGKNISTK-- 289
Query: 367 MKTYTHSLGLTGCSESTASGWSSESLNQNLKRICWKRSLENKPQSLFCVHKKE 525
H+ GLT C E A+ W +++N +ICW + K + FC++ ++
Sbjct: 290 -----HAFGLTSCKEQKANTWF--IVDKNRGQICWNQHSSEKLEKPFCLYNRK 335
>dbj|BAB02198.1| contains similarity to alpha galactosidase~gene_id:F20C19.10
[Arabidopsis thaliana]
Length = 676
Score = 187 bits (475), Expect = 1e-46
Identities = 90/173 (52%), Positives = 119/173 (68%), Gaps = 4/173 (2%)
Frame = +1
Query: 19 GGKGLKGSSWPDLDMLPFGWLTDPGSNDGPHRFSNLNLEEKRTQMTLWALAKSPLMFGGD 198
G +GL+G SWPDLDMLP GWLTD GSN GPHR NLNLEE+++QMTLW++AKSPLMFGGD
Sbjct: 307 GARGLQGKSWPDLDMLPLGWLTDQGSNVGPHRACNLNLEEQKSQMTLWSIAKSPLMFGGD 366
Query: 199 VRKIDPPTYEIITNPTLLEINYFSSNNMEFPYVTSPKNLKHGHQ----HPEEKERRSKKG 366
VR +D TY +ITNPTLLEIN +SSNN EFPY+T+ + ++ H+ HP K +K
Sbjct: 367 VRNLDATTYNLITNPTLLEINSYSSNNKEFPYITATRVSRNKHKGYPHHPTGKNISTK-- 424
Query: 367 MKTYTHSLGLTGCSESTASGWSSESLNQNLKRICWKRSLENKPQSLFCVHKKE 525
H+ GLT C E A+ W +++N +ICW + K + FC++ ++
Sbjct: 425 -----HAFGLTSCKEQKANTWF--IVDKNRGQICWNQHSSEKLEKPFCLYNRK 470
>dbj|BAB91950.1| B1003B09.4 [Oryza sativa (japonica cultivar-group)]
Length = 640
Score = 67.4 bits (163), Expect = 2e-10
Identities = 29/44 (65%), Positives = 33/44 (74%)
Frame = +1
Query: 19 GGKGLKGSSWPDLDMLPFGWLTDPGSNDGPHRFSNLNLEEKRTQ 150
G GL+G SWPDLDMLPFGWLT+ G N GPHR L +E+RTQ
Sbjct: 397 GAIGLRGRSWPDLDMLPFGWLTNAGVNQGPHRQCELTSDEQRTQ 440
>ref|NP_242736.1| BH1870~unknown conserved protein in others [Bacillus halodurans]
gi|25490070|pir||F83883 hypothetical protein BH1870
[imported] - Bacillus halodurans (strain C-125)
gi|10174488|dbj|BAB05589.1| BH1870~unknown conserved
protein in others [Bacillus halodurans]
Length = 432
Score = 65.9 bits (159), Expect = 6e-10
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +1
Query: 46 WPDLDMLPFGWLTDPGSNDGP--HRFSNLNLEEKRTQMTLWALAKSPLMFGGDVRKIDPP 219
WPD DMLP G + S DGP R++ +E+ T M LWA+ +SPLMFGG++R D
Sbjct: 268 WPDCDMLPLGHI-GIRSVDGPGGDRWTRFTKDEQLTMMNLWAICRSPLMFGGELRDNDEW 326
Query: 220 TYEIITNPTLLEINYFSSNN 279
T ++TN +L IN S N
Sbjct: 327 TLSLLTNEGILSINQKSVLN 346
>ref|ZP_00121337.1| hypothetical protein [Bifidobacterium longum DJO10A]
Length = 469
Score = 61.6 bits (148), Expect = 1e-08
Identities = 31/80 (38%), Positives = 46/80 (56%)
Frame = +1
Query: 46 WPDLDMLPFGWLTDPGSNDGPHRFSNLNLEEKRTQMTLWALAKSPLMFGGDVRKIDPPTY 225
W D DM+PFG + + G R S L L+E++T + LW + +SPLM GGD+ +
Sbjct: 272 WADADMVPFGHI-GLRAERGDDRQSRLTLDEQKTLLALWCMGRSPLMVGGDLPTSNSDAI 330
Query: 226 EIITNPTLLEINYFSSNNME 285
++ NP L E+ S+NN E
Sbjct: 331 ALLQNPALREVLAGSTNNRE 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 632,151,443
Number of Sequences: 1393205
Number of extensions: 13592905
Number of successful extensions: 39936
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 38127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39879
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
