Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019272A_C01 KMC019272A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T46221 PRE-MRNA SPLICING FACTOR SF2-like protein - Arabidop... 218 6e-56
gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 ... 218 6e-56
ref|NP_190512.2| arginine/serine-rich splicing factor (atSRp34),... 218 6e-56
dbj|BAC16007.1| putative pre-mRNA splicing factor SF2 (SR1 prote... 172 3e-42
gb|AAB71386.1| ASF/SF2 homolog [Arabidopsis thaliana] 172 4e-42
>pir||T46221 PRE-MRNA SPLICING FACTOR SF2-like protein - Arabidopsis thaliana
gi|6561944|emb|CAB62448.1| PRE-MRNA SPLICING FACTOR
SF2-like protein [Arabidopsis thaliana]
Length = 243
Score = 218 bits (554), Expect = 6e-56
Identities = 107/126 (84%), Positives = 116/126 (91%), Gaps = 6/126 (4%)
Frame = +1
Query: 229 MSGRFSRTIYVGNLPGDIRESEIEDIFYKYGRILDIELKVPPRPPCYCFVEFDNARDAED 408
MSGRFSR+IYVGNLPGDIRE EIEDIFYKYGRI+DIELKVPPRPPCYCFVEF+++RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 409 AIRGRDGYNFDGCRLRVELAHGGRGPTSSDRR-GYGGGG---GGGGGGGG--RIGLSRNS 570
AI+GRDGYN DGCRLRVELAHGGRG +SSDRR GYGGGG GGGGGGGG R G+SR+S
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 571 EFRVIV 588
EFRVIV
Sbjct: 121 EFRVIV 126
>gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 [Arabidopsis thaliana]
Length = 295
Score = 218 bits (554), Expect = 6e-56
Identities = 107/126 (84%), Positives = 116/126 (91%), Gaps = 6/126 (4%)
Frame = +1
Query: 229 MSGRFSRTIYVGNLPGDIRESEIEDIFYKYGRILDIELKVPPRPPCYCFVEFDNARDAED 408
MSGRFSR+IYVGNLPGDIRE EIEDIFYKYGRI+DIELKVPPRPPCYCFVEF+++RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 409 AIRGRDGYNFDGCRLRVELAHGGRGPTSSDRR-GYGGGG---GGGGGGGG--RIGLSRNS 570
AI+GRDGYN DGCRLRVELAHGGRG +SSDRR GYGGGG GGGGGGGG R G+SR+S
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 571 EFRVIV 588
EFRVIV
Sbjct: 121 EFRVIV 126
>ref|NP_190512.2| arginine/serine-rich splicing factor (atSRp34), putative; protein
id: At3g49430.1 [Arabidopsis thaliana]
Length = 341
Score = 218 bits (554), Expect = 6e-56
Identities = 107/126 (84%), Positives = 116/126 (91%), Gaps = 6/126 (4%)
Frame = +1
Query: 229 MSGRFSRTIYVGNLPGDIRESEIEDIFYKYGRILDIELKVPPRPPCYCFVEFDNARDAED 408
MSGRFSR+IYVGNLPGDIRE EIEDIFYKYGRI+DIELKVPPRPPCYCFVEF+++RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 409 AIRGRDGYNFDGCRLRVELAHGGRGPTSSDRR-GYGGGG---GGGGGGGG--RIGLSRNS 570
AI+GRDGYN DGCRLRVELAHGGRG +SSDRR GYGGGG GGGGGGGG R G+SR+S
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 571 EFRVIV 588
EFRVIV
Sbjct: 121 EFRVIV 126
>dbj|BAC16007.1| putative pre-mRNA splicing factor SF2 (SR1 protein) [Oryza sativa
(japonica cultivar-group)]
Length = 380
Score = 172 bits (436), Expect = 3e-42
Identities = 85/126 (67%), Positives = 101/126 (79%)
Frame = +1
Query: 211 LLLPSNMSGRFSRTIYVGNLPGDIRESEIEDIFYKYGRILDIELKVPPRPPCYCFVEFDN 390
+L MS R+SRTIYVGNLPGDIRE E+ED+FYKYGRI+DI+LK+PPRPP + FVEF++
Sbjct: 61 VLAEGRMSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGFAFVEFED 120
Query: 391 ARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPTSSDRRGYGGGGGGGGGGGGRIGLSRNS 570
RDAEDAIRGRDGYNFDG RLRVELAHGGRG +SS GGGG R G+SR++
Sbjct: 121 PRDAEDAIRGRDGYNFDGNRLRVELAHGGRGNSSS--------FNNSGGGGRRGGVSRHT 172
Query: 571 EFRVIV 588
E+RV+V
Sbjct: 173 EYRVLV 178
>gb|AAB71386.1| ASF/SF2 homolog [Arabidopsis thaliana]
Length = 272
Score = 172 bits (435), Expect = 4e-42
Identities = 85/123 (69%), Positives = 96/123 (77%), Gaps = 3/123 (2%)
Frame = +1
Query: 229 MSGRFSRTIYVGNLPGDIRESEIEDIFYKYGRILDIELKVPPRPPCYCFVEFDNARDAED 408
MS R SRT+YVGNLPGDIRE E+ED+F KYG ++ I+LKVPPRPP Y FVEFD+ARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 409 AIRGRDGYNFDGCRLRVELAHGGRGPTSSDRRGYGGGGGGGG---GGGGRIGLSRNSEFR 579
AI GRDGY+FDG RLRVELAHGGR + R + GGG GGG G GG G SR SEFR
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 580 VIV 588
V+V
Sbjct: 121 VLV 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,518,283
Number of Sequences: 1393205
Number of extensions: 15991248
Number of successful extensions: 523256
Number of sequences better than 10.0: 7355
Number of HSP's better than 10.0 without gapping: 99913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277301
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
