Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019266A_C01 KMC019266A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187475.1| unknown protein; protein id: At3g08630.1 [Arabi... 164 6e-40
ref|NP_187476.1| unknown protein; protein id: At3g08640.1, suppo... 157 1e-37
dbj|BAB85250.1| P0425G02.25 [Oryza sativa (japonica cultivar-gro... 150 1e-35
ref|NP_197671.1| putative protein; protein id: At5g22790.1, supp... 68 7e-11
gb|AAF31706.1|AF221857_1 unknown [Euphorbia esula] 67 2e-10
>ref|NP_187475.1| unknown protein; protein id: At3g08630.1 [Arabidopsis thaliana]
gi|12322720|gb|AAG51344.1|AC012562_5 unknown protein;
31866-32885 [Arabidopsis thaliana]
Length = 339
Score = 164 bits (416), Expect = 6e-40
Identities = 78/98 (79%), Positives = 90/98 (91%)
Frame = -2
Query: 568 GLVGTAISNGLILLRKKMDPGFETPNKPPPPLLNALTWAAHMGVSSNLRYQTLNGAEFVL 389
GLVGTAISNGLI+LRKK+DP FETPNKPPP LLN+LTWA HMGVS+N+RYQTLNGAEF+L
Sbjct: 222 GLVGTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLL 281
Query: 388 EKSLSPLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQ 275
EKSL PLVFK+SV +R++NNVLGGM+FV LA+ TGSQ
Sbjct: 282 EKSLPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQ 319
>ref|NP_187476.1| unknown protein; protein id: At3g08640.1, supported by cDNA:
gi_19698960 [Arabidopsis thaliana]
gi|12322723|gb|AAG51347.1|AC012562_8 unknown protein;
33915-34928 [Arabidopsis thaliana]
gi|19698961|gb|AAL91216.1| unknown protein [Arabidopsis
thaliana] gi|22136296|gb|AAM91226.1| unknown protein
[Arabidopsis thaliana]
Length = 337
Score = 157 bits (396), Expect = 1e-37
Identities = 77/112 (68%), Positives = 89/112 (78%)
Frame = -2
Query: 568 GLVGTAISNGLILLRKKMDPGFETPNKPPPPLLNALTWAAHMGVSSNLRYQTLNGAEFVL 389
GLVGTAISNGLI+LRKKMDP FETPNKPPP +LN+LTWA HMGVS+N RYQTLNG EF+L
Sbjct: 225 GLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLL 284
Query: 388 EKSLSPLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQKSVGDGDEDPREKD 233
K L PLVFK+SV +R NNV GGM+FV+LA+ TGSQ + +EKD
Sbjct: 285 AKVLPPLVFKTSVIVLRCANNVAGGMSFVLLARMTGSQSVEEKTEISEKEKD 336
>dbj|BAB85250.1| P0425G02.25 [Oryza sativa (japonica cultivar-group)]
gi|20161467|dbj|BAB90391.1| P0432B10.9 [Oryza sativa
(japonica cultivar-group)]
Length = 401
Score = 150 bits (379), Expect = 1e-35
Identities = 73/100 (73%), Positives = 82/100 (82%)
Frame = -2
Query: 568 GLVGTAISNGLILLRKKMDPGFETPNKPPPPLLNALTWAAHMGVSSNLRYQTLNGAEFVL 389
GL GTAISNGLI LRK+MDP FETPNK PP LLNA TWA HMGVSSNLRYQTLNG E++L
Sbjct: 265 GLAGTAISNGLISLRKRMDPAFETPNKAPPTLLNAATWAIHMGVSSNLRYQTLNGVEYLL 324
Query: 388 EKSLSPLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQKS 269
+ P VFK SV +R +NNVLGGM+FV+LA+ TGSQKS
Sbjct: 325 ANAAPPSVFKVSVVALRCINNVLGGMSFVLLARLTGSQKS 364
>ref|NP_197671.1| putative protein; protein id: At5g22790.1, supported by cDNA:
gi_13605898, supported by cDNA: gi_19548024 [Arabidopsis
thaliana] gi|9758754|dbj|BAB09278.1|
gb|AAF31706.1~gene_id:K8E10.2~similar to unknown protein
[Arabidopsis thaliana]
gi|13605899|gb|AAK32935.1|AF367348_1 AT5g22790/K8E10_2
[Arabidopsis thaliana] gi|19548025|gb|AAL87376.1|
AT5g22790/K8E10_2 [Arabidopsis thaliana]
Length = 433
Score = 68.2 bits (165), Expect = 7e-11
Identities = 41/103 (39%), Positives = 59/103 (56%), Gaps = 5/103 (4%)
Frame = -2
Query: 568 GLVGTAISNGLILLRKKMDPGFETPNKPPPPLL-NALTWAAHMGVSSNLRYQTLNGAEFV 392
GL+G I+N ++ ++ + E + P PPL +A W +G+SSN RYQ +NG E V
Sbjct: 333 GLIGQGIANLIMTAKRSVKKSEE--DVPIPPLFESAALWGVFLGLSSNARYQIINGLERV 390
Query: 391 LEKSLS----PLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQ 275
+E S + P+V + G+R NNV GGM FV AK +G Q
Sbjct: 391 VEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433
>gb|AAF31706.1|AF221857_1 unknown [Euphorbia esula]
Length = 268
Score = 67.0 bits (162), Expect = 2e-10
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Frame = -2
Query: 568 GLVGTAISNGLILLRKKMDPGFETPNKPPPPLLNALTWAAHMGVSSNLRYQTLNGAEFVL 389
GL+G I+N LI+ K+ E PP + +A+ W + VSSN RYQ +NG E ++
Sbjct: 168 GLIGQGIAN-LIMTAKRSIKKSEEDIPVPPLVQSAVLWGVFLAVSSNTRYQIINGLESLV 226
Query: 388 EKS----LSPLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQ 275
EKS P V + G+R NN+ GGM F+ AK +G Q
Sbjct: 227 EKSPLAKKVPPVAMAFTVGVRFANNIYGGMQFIDWAKLSGVQ 268
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,567,048
Number of Sequences: 1393205
Number of extensions: 11611017
Number of successful extensions: 35182
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35134
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
