Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019226A_C01 KMC019226A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564009.1| expressed protein; protein id: At1g16860.1, sup... 154 1e-36
ref|NP_178009.1| hypothetical protein; protein id: At1g78880.1, ... 140 1e-32
ref|NP_193960.1| putative protein; protein id: At4g22290.1 [Arab... 91 8e-18
gb|AAM98245.1| unknown protein [Arabidopsis thaliana] 91 8e-18
gb|ZP_00113550.1| hypothetical protein [Prochlorococcus marinus ... 37 0.17
>ref|NP_564009.1| expressed protein; protein id: At1g16860.1, supported by cDNA:
gi_15292906 [Arabidopsis thaliana]
gi|25372815|pir||H86303 hypothetical protein F6I1.14
[imported] - Arabidopsis thaliana
gi|9802778|gb|AAF99847.1|AC051629_14 Unknown protein
[Arabidopsis thaliana] gi|15292907|gb|AAK92824.1|
unknown protein [Arabidopsis thaliana]
gi|21436333|gb|AAM51336.1| unknown protein [Arabidopsis
thaliana] gi|23397053|gb|AAN31812.1| unknown protein
[Arabidopsis thaliana]
Length = 474
Score = 154 bits (388), Expect = 1e-36
Identities = 78/107 (72%), Positives = 89/107 (82%)
Frame = +2
Query: 242 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPSDGSK 421
MGSR+PSHQLSNGL+VSGRPEQPKER PTMS+VAMPYTGGDIK+SGELGKMFDIP+DG+K
Sbjct: 1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60
Query: 422 SRKSGPLSNAPSRTGSFAGAASHSGPIMQNAAARSAYVTSGNVAAGG 562
SRKSGP+ APSR+GSFAG A SGP A R SG++A+ G
Sbjct: 61 SRKSGPIPGAPSRSGSFAGTA-QSGPGAPMATGR----MSGSLASAG 102
>ref|NP_178009.1| hypothetical protein; protein id: At1g78880.1, supported by cDNA:
gi_18176177, supported by cDNA: gi_20465702 [Arabidopsis
thaliana] gi|25372814|pir||C96818 hypothetical protein
F9K20.7 [imported] - Arabidopsis thaliana
gi|3834307|gb|AAC83023.1| Strong similarity to gene
T10I14.120 gi|2832679 putative protein from Arabidopsis
thaliana BAC gb|AL021712. ESTs gb|N65887 and gb|N65627
come from this gene gi|18176178|gb|AAL59998.1| unknown
protein [Arabidopsis thaliana]
gi|20465703|gb|AAM20320.1| unknown protein [Arabidopsis
thaliana] gi|21539479|gb|AAM53292.1| unknown protein
[Arabidopsis thaliana] gi|23198312|gb|AAN15683.1|
unknown protein [Arabidopsis thaliana]
Length = 468
Score = 140 bits (353), Expect = 1e-32
Identities = 73/107 (68%), Positives = 85/107 (79%)
Frame = +2
Query: 242 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPSDGSK 421
MGSR+ SHQLSNGL+VSGRPEQPKE+ PTMSSVAMPYTGGDIKKSGELGKMFDIP+DG+K
Sbjct: 1 MGSRYASHQLSNGLFVSGRPEQPKEKPPTMSSVAMPYTGGDIKKSGELGKMFDIPTDGTK 60
Query: 422 SRKSGPLSNAPSRTGSFAGAASHSGPIMQNAAARSAYVTSGNVAAGG 562
SRKSGP++ SR+G + SGP+ NA R SGN+A+ G
Sbjct: 61 SRKSGPITGGSSRSG------AQSGPV-PNATGR----MSGNLASAG 96
>ref|NP_193960.1| putative protein; protein id: At4g22290.1 [Arabidopsis thaliana]
gi|7486824|pir||T04910 hypothetical protein T10I14.120 -
Arabidopsis thaliana gi|2832679|emb|CAA16779.1| putative
protein [Arabidopsis thaliana]
gi|7269075|emb|CAB79184.1| putative protein [Arabidopsis
thaliana]
Length = 974
Score = 91.3 bits (225), Expect = 8e-18
Identities = 61/135 (45%), Positives = 75/135 (55%), Gaps = 28/135 (20%)
Frame = +2
Query: 242 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIP----- 406
M R SHQL NGLYVSG+ EQPKER PTM++ A+PYTGGDIKKSGELG+MFDI
Sbjct: 1 MAGRIQSHQLPNGLYVSGKLEQPKERPPTMAARAVPYTGGDIKKSGELGRMFDISVVDSA 60
Query: 407 -------------SDGSKS------RKSGPLSNAPS---RTGSFAGAA-SHSGPIMQNAA 517
S G S R SG SN S R+G +G+ SGP+ Q
Sbjct: 61 SFQGPPPLIVGGNSSGGTSRLQAPPRVSGSSSNPNSGSVRSGPNSGSVKKFSGPLSQ--L 118
Query: 518 ARSAYVTSGNVAAGG 562
+ +TSG++ + G
Sbjct: 119 QPTGLITSGSLGSSG 133
>gb|AAM98245.1| unknown protein [Arabidopsis thaliana]
Length = 445
Score = 91.3 bits (225), Expect = 8e-18
Identities = 61/135 (45%), Positives = 75/135 (55%), Gaps = 28/135 (20%)
Frame = +2
Query: 242 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIP----- 406
M R SHQL NGLYVSG+ EQPKER PTM++ A+PYTGGDIKKSGELG+MFDI
Sbjct: 1 MAGRIQSHQLPNGLYVSGKLEQPKERPPTMAARAVPYTGGDIKKSGELGRMFDISVVDSA 60
Query: 407 -------------SDGSKS------RKSGPLSNAPS---RTGSFAGAA-SHSGPIMQNAA 517
S G S R SG SN S R+G +G+ SGP+ Q
Sbjct: 61 SFQGPPPLIVGGNSSGGTSRLQAPPRVSGSSSNPNSGSVRSGPNSGSVKKFSGPLSQ--L 118
Query: 518 ARSAYVTSGNVAAGG 562
+ +TSG++ + G
Sbjct: 119 QPTGLITSGSLGSSG 133
>gb|ZP_00113550.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313]
Length = 484
Score = 37.0 bits (84), Expect = 0.17
Identities = 27/73 (36%), Positives = 36/73 (48%), Gaps = 5/73 (6%)
Frame = +2
Query: 290 SGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMF----DIPSDGSKSRK-SGPLSNAP 454
S +P +PK P + P I K GE K+ +I S GSK+ SG LSNAP
Sbjct: 69 SPQPNRPKPPKPAAEAPRKPLQVMHISKRGEQDKLVREAAEITSPGSKATAASGQLSNAP 128
Query: 455 SRTGSFAGAASHS 493
+R+ S A+ S
Sbjct: 129 NRSVSADAASDES 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,228,098
Number of Sequences: 1393205
Number of extensions: 10153150
Number of successful extensions: 25146
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 24062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25096
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
