Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019224A_C01 KMC019224A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB17093.1| P0410E01.14 [Oryza sativa (japonica cultivar-gro... 158 4e-38
ref|NP_193589.1| hypothetical protein; protein id: At4g18540.1 [... 117 8e-26
gb|EAA34732.1| hypothetical protein [Neurospora crassa] 77 9e-14
gb|EAA26649.1| hypothetical protein [Neurospora crassa] 54 1e-06
ref|NP_188532.1| hypothetical protein; protein id: At3g19020.1 [... 39 0.034
>dbj|BAB17093.1| P0410E01.14 [Oryza sativa (japonica cultivar-group)]
Length = 575
Score = 158 bits (399), Expect = 4e-38
Identities = 78/135 (57%), Positives = 99/135 (72%), Gaps = 8/135 (5%)
Frame = -1
Query: 506 HFAGLPYLVNLYQRVLLVATGSGICVFLSFLLQKSHA---DVCLIWVAKDIELNFGKEMR 336
HFAGLPYL+ +Y+R +VATGSGICVFLS L+Q S ++ L+WVAK +E N+G+E+R
Sbjct: 441 HFAGLPYLIGMYRRATMVATGSGICVFLSLLMQPSTTTATELSLVWVAKGVEANYGEEIR 500
Query: 335 ELV-----DRYPKEKVVVHDTAVSGRPHVADMSVNAAIKWNVEVVIVTSNPEGSRDVVRA 171
V + +VVVHDTAV GRP V +++V AA +W EVV+VTSNPEGSRDVV
Sbjct: 501 AAVAAAAGGKSMAGRVVVHDTAVMGRPDVRELAVAAARRWGAEVVVVTSNPEGSRDVVSG 560
Query: 170 CHRAKIPAFGPLWDS 126
C +A IPAFGP+WDS
Sbjct: 561 CRKAGIPAFGPIWDS 575
>ref|NP_193589.1| hypothetical protein; protein id: At4g18540.1 [Arabidopsis
thaliana] gi|7452451|pir||T04550 hypothetical protein
F28J12.200 - Arabidopsis thaliana
gi|2832659|emb|CAA16734.1| hypothetical protein
[Arabidopsis thaliana] gi|7268647|emb|CAB78856.1|
hypothetical protein [Arabidopsis thaliana]
Length = 520
Score = 117 bits (293), Expect = 8e-26
Identities = 62/128 (48%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Frame = -1
Query: 506 HFAGLPYLVNLYQRVLLVATGSGICVFLSFLLQKSHADVCLIWVAKDIELNFGKEMRELV 327
HFAGLPYLVNLY +VLLV G F FL + +R +
Sbjct: 414 HFAGLPYLVNLYDKVLLVPRVRGFAYFYRFLCNR---------------------VRLRI 452
Query: 326 DRYP-KEKVVVHDTAVSGRPHVADMSVNAAIKWNVEVVIVTSNPEGSRDVVRACHRAKIP 150
YP +++++VHDTA+ GRP+V+ MSV A+ K+ +VVIVTSNPEGSRDVV AC + +P
Sbjct: 453 KDYPHQDRIIVHDTAILGRPNVSKMSVEASKKFGAQVVIVTSNPEGSRDVVNACKASGVP 512
Query: 149 AFGPLWDS 126
AFGP+WDS
Sbjct: 513 AFGPIWDS 520
>gb|EAA34732.1| hypothetical protein [Neurospora crassa]
Length = 1036
Score = 77.4 bits (189), Expect = 9e-14
Identities = 39/124 (31%), Positives = 70/124 (56%)
Frame = -1
Query: 497 GLPYLVNLYQRVLLVATGSGICVFLSFLLQKSHADVCLIWVAKDIELNFGKEMRELVDRY 318
G Y++ ++ ++++V TGSGI LSF+ + D+ +IW K +G+ +LV R
Sbjct: 914 GFGYVLRMFPKIIVVTTGSGIGPCLSFIEDANRPDMRVIWQTKSPLKTYGQRTLDLVHRM 973
Query: 317 PKEKVVVHDTAVSGRPHVADMSVNAAIKWNVEVVIVTSNPEGSRDVVRACHRAKIPAFGP 138
V++ DT+++GR + + + ++N E V SNP ++ +V C IPA+GP
Sbjct: 974 DSNPVIL-DTSITGRVDMLPIVLRLFKEFNAEAVCCISNPMMTKKIVHGCEMRGIPAYGP 1032
Query: 137 LWDS 126
++DS
Sbjct: 1033 IFDS 1036
>gb|EAA26649.1| hypothetical protein [Neurospora crassa]
Length = 593
Score = 53.5 bits (127), Expect = 1e-06
Identities = 37/140 (26%), Positives = 63/140 (44%), Gaps = 16/140 (11%)
Frame = -1
Query: 497 GLPYLVNLYQRVLLVATGSGICVFLSFLLQKSHADVCLIWVAKDIELNFGKEMRELVDRY 318
G+ L+ V+++ TGSGI LS Q+ V +IW + FG+ + +L+ +
Sbjct: 455 GVMRCAGLFSPVIVIGTGSGIAPCLSLFTQRPDHPVRIIWSTPNPLQTFGRSLLDLIYKT 514
Query: 317 PKEKVVVHDTAVSGRPHVADMS----------------VNAAIKWNVEVVIVTSNPEGSR 186
VV+ DT +GRP + ++ V + E V++ SN + +
Sbjct: 515 DPAAVVI-DTRKTGRPDLVKVAYRMWEQSRNGIFPEELVRPETRKPCEAVVIISNQKVTE 573
Query: 185 DVVRACHRAKIPAFGPLWDS 126
VV +PA+G L+DS
Sbjct: 574 KVVYGLESRGVPAYGALFDS 593
>ref|NP_188532.1| hypothetical protein; protein id: At3g19020.1 [Arabidopsis thaliana]
Length = 951
Score = 38.9 bits (89), Expect = 0.034
Identities = 29/96 (30%), Positives = 36/96 (37%)
Frame = +2
Query: 218 PLQHST*LQHSRSYPPHGGDQKPPCHEPPPSPSDICPPILSSPSQSSIQYP*PPISSIHQ 397
P HS S PP PP H PPP PP+ S P S I P PP+ S
Sbjct: 756 PPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPSPIYSPPPPVFS--- 812
Query: 398 HGFSAEEMTRTHKSLNLWPPTTLSDTSSPNKASLQS 505
K + PP T ++P +S +S
Sbjct: 813 ---------PPPKPVTPLPPATSPMANAPTPSSSES 839
Score = 33.9 bits (76), Expect = 1.1
Identities = 17/43 (39%), Positives = 20/43 (45%)
Frame = +2
Query: 260 PPHGGDQKPPCHEPPPSPSDICPPILSSPSQSSIQYP*PPISS 388
PP PP H PPP P PP + SP + P PP+ S
Sbjct: 748 PPPVHSPPPPVHSPPPPPVHSPPPPVHSP-PPPVHSPPPPVHS 789
Score = 33.9 bits (76), Expect = 1.1
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 254 SYPPHGGDQKPPCHEPPPSPSDICPPILSSPSQSSIQYP*PPISS 388
S PP PP H PPP P PP + SP + P PP+ S
Sbjct: 664 SPPPPVYSPPPPVHSPPPPPVHSPPPPVHSP-PPPVHSPPPPVHS 707
Score = 33.1 bits (74), Expect = 1.9
Identities = 18/43 (41%), Positives = 20/43 (45%), Gaps = 1/43 (2%)
Frame = +2
Query: 254 SYPPHGGDQKPPCHEPPPS-PSDICPPILSSPSQSSIQYP*PP 379
S PP PP H PPP S PP+ S P + I P PP
Sbjct: 707 SPPPPVHSPPPPVHSPPPPVQSPPPPPVFSPPPPAPIYSPPPP 749
Score = 32.7 bits (73), Expect = 2.4
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = +2
Query: 218 PLQHST*LQHSRSYPPHGGDQKPPCHEPPPSPSDICPPILSSPSQSSIQYP*PPISS 388
P HS S PP PP H PPP PP+ S P + P PP+ S
Sbjct: 674 PPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPP--PPVHSPPPPVQS 728
Score = 32.3 bits (72), Expect = 3.2
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +2
Query: 218 PLQHST*LQHSRSYPPHGGDQKPPCHEPPPSPSDICPPILSSPSQSSIQYP*PPISS 388
P T +S P H PP H PPP PP+ S P + P PP+ S
Sbjct: 624 PSTEETKTTSPQSPPVHSPPPPPPVHSPPPPVFSPPPPMHSPP--PPVYSPPPPVHS 678
Score = 31.6 bits (70), Expect = 5.4
Identities = 17/42 (40%), Positives = 19/42 (44%)
Frame = +2
Query: 254 SYPPHGGDQKPPCHEPPPSPSDICPPILSSPSQSSIQYP*PP 379
S PP PP H PPP PP+ S P +Q P PP
Sbjct: 693 SPPPPVHSPPPPVHSPPPPVHSPPPPVHSPP--PPVQSPPPP 732
Score = 31.2 bits (69), Expect = 7.1
Identities = 17/42 (40%), Positives = 19/42 (44%)
Frame = +2
Query: 254 SYPPHGGDQKPPCHEPPPSPSDICPPILSSPSQSSIQYP*PP 379
S PP PP H PPP P PP + SP + P PP
Sbjct: 700 SPPPPVHSPPPPVHSPPP-PVHSPPPPVQSPPPPPVFSPPPP 740
Score = 31.2 bits (69), Expect = 7.1
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = +2
Query: 287 PCHEPPPSPSDICPPILSSPSQSSIQYP*PPISS 388
P + PPP P PP + SP + P PP+ S
Sbjct: 742 PIYSPPPPPVHSPPPPVHSPPPPPVHSPPPPVHS 775
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,938,359
Number of Sequences: 1393205
Number of extensions: 11269997
Number of successful extensions: 55208
Number of sequences better than 10.0: 252
Number of HSP's better than 10.0 without gapping: 41697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51398
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
