Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019219A_C01 KMC019219A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565764.1| expressed protein; protein id: At2g33330.1, sup... 70 9e-12
dbj|BAC42649.1| unknown protein [Arabidopsis thaliana] 68 4e-11
ref|NP_187087.1| hypothetical protein; protein id: At3g04370.1 [... 53 1e-06
gb|AAF26777.1|AC016829_1 hypothetical protein, 3' partial [Arabi... 48 5e-05
ref|NP_171946.1| unknown protein; protein id: At1g04520.1 [Arabi... 43 0.002
>ref|NP_565764.1| expressed protein; protein id: At2g33330.1, supported by cDNA:
35273., supported by cDNA: gi_14596050, supported by
cDNA: gi_20148722 [Arabidopsis thaliana]
gi|14596051|gb|AAK68753.1| Unknown protein [Arabidopsis
thaliana] gi|20148723|gb|AAM10252.1| unknown protein
[Arabidopsis thaliana] gi|20196846|gb|AAB80651.2|
expressed protein [Arabidopsis thaliana]
Length = 304
Score = 70.5 bits (171), Expect = 9e-12
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 11/74 (14%)
Frame = -3
Query: 478 QVYLYSCYISYSFYPNGVP-----------TIASSSPGGHQHTSRTVAIAVGGVAAFGFL 332
Q+YL+ C++ YSFYPNGVP + +SSS T +TVAI VGG A GFL
Sbjct: 227 QIYLHKCFVGYSFYPNGVPKRSSPYPSSGSSGSSSSSSSSGTTGKTVAIIVGGTAGVGFL 286
Query: 331 IVCLMCLKSVLKKR 290
++CL+ +K+++KK+
Sbjct: 287 VICLLFVKNLMKKK 300
>dbj|BAC42649.1| unknown protein [Arabidopsis thaliana]
Length = 297
Score = 68.2 bits (165), Expect = 4e-11
Identities = 32/55 (58%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Frame = -3
Query: 478 QVYLYSCYISYSFYPNGVPTIASSSPGG-HQHTSRTVAIAVGGVAAFGFLIVCLM 317
QVYL C++SYS+Y +GVP I S G QHT RT+A+AVGGV GF+IVCL+
Sbjct: 233 QVYLQKCFVSYSYYSHGVPNIEPLSGGEKRQHTERTIALAVGGVFVLGFVIVCLL 287
>ref|NP_187087.1| hypothetical protein; protein id: At3g04370.1 [Arabidopsis
thaliana] gi|7547096|gb|AAF63768.1| hypothetical protein
[Arabidopsis thaliana]
Length = 332
Score = 53.1 bits (126), Expect = 1e-06
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = -3
Query: 478 QVYLYSCYISYSFYPNGVPTIASSSPGGHQHTSRTVAIAVGGVAAFGFLIVCLMCLKSVL 299
Q+YL C++ Y+++P+ +P S G +T +++AI VGGVAA F+ + M LKS+
Sbjct: 254 QIYLEGCHVGYTYHPHELPN-DSYHEGSKVNTGKSLAIVVGGVAALVFVAIFFMFLKSLR 312
Query: 298 KKRSG 284
KK G
Sbjct: 313 KKGDG 317
>gb|AAF26777.1|AC016829_1 hypothetical protein, 3' partial [Arabidopsis thaliana]
Length = 310
Score = 48.1 bits (113), Expect = 5e-05
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = -3
Query: 478 QVYLYSCYISYSFYPNGVPTIASSSPGGHQHTSRTVAIAVGGVAAFGFLIVCLMCLKS 305
Q+YL C++ Y+++P+ +P S G +T +++AI VGGVAA F+ + M LKS
Sbjct: 254 QIYLEGCHVGYTYHPHELPN-DSYHEGSKVNTGKSLAIVVGGVAALVFVAIFFMFLKS 310
>ref|NP_171946.1| unknown protein; protein id: At1g04520.1 [Arabidopsis thaliana]
gi|25406792|pir||F86177 protein F19P19.1 [imported] -
Arabidopsis thaliana gi|2341024|gb|AAB70422.1| F19P19.1
[Arabidopsis thaliana]
Length = 270
Score = 43.1 bits (100), Expect = 0.002
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = -3
Query: 478 QVYLYSCYISYSFYPNGVPTIASSSPGGHQHTS 380
Q+YL+ C+I+YS+YPNGVP +SSS +S
Sbjct: 225 QIYLHKCFIAYSYYPNGVPRRSSSSSSSSSSSS 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,499,422
Number of Sequences: 1393205
Number of extensions: 8770962
Number of successful extensions: 20552
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20540
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
