Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019197A_C01 KMC019197A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_230991.1| similar to RIKEN cDNA 1700023B02 [Mus musculus]... 45 5e-04
ref|NP_495013.1| pre-mRNA splicing SR Protein RSP-4 (22.6 kD) (r... 44 0.001
gb|AAH45229.1| Unknown (protein for MGC:53177) [Xenopus laevis] 44 0.002
emb|CAD11415.1| hypothetical protein [Neurospora crassa] gi|2892... 44 0.002
dbj|BAB90677.1| putative RNA helicase, DRH1 [Oryza sativa (japon... 44 0.002
>ref|XP_230991.1| similar to RIKEN cDNA 1700023B02 [Mus musculus] [Rattus norvegicus]
Length = 350
Score = 45.4 bits (106), Expect = 5e-04
Identities = 26/63 (41%), Positives = 35/63 (55%)
Frame = -3
Query: 558 DKKSPDRRGRSKSHSRSHGSSRSRSPDATPPKRHDQRTSISRSRSRSSSPSGGQKGLVSY 379
++K DR G S+S SR+ GS RSRS K H +R + SR S G+KG S+
Sbjct: 281 ERKGSDRNGGSRSRSRAEGSRRSRSRSPCGQK-HREREARSRPHQSPSEEQKGRKGTRSH 339
Query: 378 GDA 370
GD+
Sbjct: 340 GDS 342
>ref|NP_495013.1| pre-mRNA splicing SR Protein RSP-4 (22.6 kD) (rsp-4)
[Caenorhabditis elegans] gi|3929375|sp|Q09511|SFR2_CAEEL
Putative splicing factor, arginine/serine-rich 2
(Splicing factor SC35) (SC-35) (Splicing component, 35
kDa) gi|7439997|pir||T15917 hypothetical protein EEED8.7
- Caenorhabditis elegans gi|733604|gb|AAC46767.1| Sr
protein (splicing factor) protein 4, isoform a
[Caenorhabditis elegans]
Length = 196
Score = 44.3 bits (103), Expect = 0.001
Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -3
Query: 561 RDKKSPDRRGRSKSHSRSHGSSRSRSPDATPPKRHDQRTSISR---SRSRSSSPSGGQKG 391
R +SP RR RS +SRS RSRS +PP R D+R S R SRSRS SP + G
Sbjct: 114 RRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSR-DRRDSPDRRDNSRSRSRSPPPREDG 172
Score = 37.0 bits (84), Expect = 0.17
Identities = 23/56 (41%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Frame = -3
Query: 561 RDKKSPDRRGRSKSHSRSHGSSRSRSP----DATPPKRHDQRTSISRSRSRSSSPS 406
R + P R R R + SRSRSP D +P +R + S SRS SRS S S
Sbjct: 140 RTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSNS 195
>gb|AAH45229.1| Unknown (protein for MGC:53177) [Xenopus laevis]
Length = 215
Score = 43.5 bits (101), Expect = 0.002
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = -3
Query: 552 KSPDRRGRSKSHSRSHGSSRSRSPDATPPKRHDQRTSISRSRSRSSS 412
+S R RSKSHSR+ +RSRS + + + +S+SRSRSRS S
Sbjct: 137 RSRSRHSRSKSHSRTRSRTRSRSKSRSARRSKSKSSSVSRSRSRSRS 183
Score = 42.0 bits (97), Expect = 0.005
Identities = 29/71 (40%), Positives = 38/71 (52%)
Frame = -3
Query: 561 RDKKSPDRRGRSKSHSRSHGSSRSRSPDATPPKRHDQRTSISRSRSRSSSPSGGQKGLVS 382
R +SP RR RS+S S+S SRSRS RH + S SR+RSR+ S S + S
Sbjct: 115 RRSRSPRRRRRSRSRSKSRSRSRSRS-------RHSRSKSHSRTRSRTRSRSKSRSARRS 167
Query: 381 YGDASPDSGAR 349
+S S +R
Sbjct: 168 KSKSSSVSRSR 178
Score = 38.5 bits (88), Expect = 0.058
Identities = 27/62 (43%), Positives = 35/62 (55%), Gaps = 2/62 (3%)
Frame = -3
Query: 561 RDKKSPDRRGRSKSH--SRSHGSSRSRSPDATPPKRHDQRTSISRSRSRSSSPSGGQKGL 388
R K RR +SKS SRS SRSR+ ++ PP + S SRSRS+S S ++G
Sbjct: 158 RSKSRSARRSKSKSSSVSRSRSRSRSRTRNSPPP-----QNSKSRSRSKSPPKSPEEEGA 212
Query: 387 VS 382
VS
Sbjct: 213 VS 214
>emb|CAD11415.1| hypothetical protein [Neurospora crassa] gi|28922720|gb|EAA31943.1|
hypothetical protein [Neurospora crassa]
Length = 740
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/50 (52%), Positives = 31/50 (62%)
Frame = -3
Query: 561 RDKKSPDRRGRSKSHSRSHGSSRSRSPDATPPKRHDQRTSISRSRSRSSS 412
R +SP+RR RS+S SRS SRSRS D + + R SRSRSRS S
Sbjct: 401 RLSESPERRYRSRSRSRSQSRSRSRSRDRSRDRSARSRGYDSRSRSRSRS 450
Score = 33.1 bits (74), Expect = 2.4
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 14/64 (21%)
Frame = -3
Query: 555 KKSPDRRGRSKSHSRSHGSSR----SRSPDATP----------PKRHDQRTSISRSRSRS 418
+++ R RS+S SRS+ SR SR DA P P+R + S SRS+SRS
Sbjct: 363 ERTRSSRSRSRSRSRSYSPSRSRDSSRGSDARPAFKRQRLSESPERRYRSRSRSRSQSRS 422
Query: 417 SSPS 406
S S
Sbjct: 423 RSRS 426
>dbj|BAB90677.1| putative RNA helicase, DRH1 [Oryza sativa (japonica
cultivar-group)]
Length = 891
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 561 RDKKSPDRRGRSKSHSRSHGSSRSRSPDATPPKRHDQRTSISRSRSRSSSPS-GGQKGLV 385
R + DR RS SR H SR+RS + + + + SRSRSRS S ++
Sbjct: 599 RSRSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSAT 658
Query: 384 SYGDASPDSG 355
G A PDSG
Sbjct: 659 GSGSALPDSG 668
Score = 38.1 bits (87), Expect = 0.076
Identities = 22/42 (52%), Positives = 27/42 (63%)
Frame = -3
Query: 537 RGRSKSHSRSHGSSRSRSPDATPPKRHDQRTSISRSRSRSSS 412
RGRS+S SRS SRSP + +RH + + SRSRSRS S
Sbjct: 593 RGRSRSRSRSDSDRYSRSPKRS--RRHSRSRTRSRSRSRSRS 632
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,385,094
Number of Sequences: 1393205
Number of extensions: 10624810
Number of successful extensions: 39653
Number of sequences better than 10.0: 727
Number of HSP's better than 10.0 without gapping: 28686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36125
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
