Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019193A_C01 KMC019193A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177964.1| hypothetical protein; protein id: At1g78430.1 [... 80 1e-14
ref|NP_564015.1| Expressed protein; protein id: At1g17140.1, sup... 77 1e-13
gb|AAO72652.1| myosin heavy chain-like protein [Oryza sativa (ja... 53 2e-06
ref|NP_610925.2| CG30483-PA [Drosophila melanogaster] gi|2162721... 38 0.084
gb|AAK77286.1| GH06265p [Drosophila melanogaster] 38 0.084
>ref|NP_177964.1| hypothetical protein; protein id: At1g78430.1 [Arabidopsis
thaliana] gi|25405032|pir||G96812 protein F3F9.6
[imported] - Arabidopsis thaliana
gi|8052548|gb|AAF71812.1|AC013430_21 F3F9.6 [Arabidopsis
thaliana]
Length = 326
Score = 80.1 bits (196), Expect = 1e-14
Identities = 44/72 (61%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Frame = -1
Query: 529 AVLAGDVDM--RIPERCGSMDKHFETPVVGRYNGYVGSPGVADDFDDGFGGGKKKGSGIR 356
AVL+G V+M R E+CGSM+KHF GR+ VGSPG+ADD DDG GK+K SG +
Sbjct: 264 AVLSGGVEMNGRFSEQCGSMEKHF----AGRF---VGSPGMADDSDDG--SGKRKSSGKK 314
Query: 355 MFGDLWKKRGQK 320
MFGDLWKK+GQK
Sbjct: 315 MFGDLWKKKGQK 326
>ref|NP_564015.1| Expressed protein; protein id: At1g17140.1, supported by cDNA:
156655. [Arabidopsis thaliana]
gi|21553674|gb|AAM62767.1| unknown [Arabidopsis
thaliana]
Length = 344
Score = 77.4 bits (189), Expect = 1e-13
Identities = 33/70 (47%), Positives = 50/70 (71%)
Frame = -1
Query: 529 AVLAGDVDMRIPERCGSMDKHFETPVVGRYNGYVGSPGVADDFDDGFGGGKKKGSGIRMF 350
AVL+G+ +M +R GS +K++ G++ PG+ADD+DDG G GK+K SG++MF
Sbjct: 275 AVLSGEFEMNGRDRSGSTEKYYAGGFFDPSAGFMDPPGMADDYDDGLGSGKRKSSGMKMF 334
Query: 349 GDLWKKRGQK 320
G+LW+K+GQK
Sbjct: 335 GELWRKKGQK 344
>gb|AAO72652.1| myosin heavy chain-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 500
Score = 53.1 bits (126), Expect = 2e-06
Identities = 29/53 (54%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = -1
Query: 475 DKHFETPVVGRYNGYVGSPG-VADDFDDGFGGGKKKGSGIRMFGDLWKKRGQK 320
D HF VG GSP + DD DD GGK+KG+GIRM GDLWKK+G K
Sbjct: 452 DAHF----VGHNGNGWGSPATMPDDCDDEGFGGKRKGAGIRMLGDLWKKKGSK 500
>ref|NP_610925.2| CG30483-PA [Drosophila melanogaster] gi|21627215|gb|AAF58298.2|
CG30483-PA [Drosophila melanogaster]
Length = 1843
Score = 37.7 bits (86), Expect = 0.084
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Frame = +1
Query: 388 QNHRQSHQPHQETQHI----HCTYQQQVSQSAYPWSHTVQESSYPHP 516
QNH+Q H H + QH+ H + QQ+ Q P HT+Q P P
Sbjct: 389 QNHQQHHAGHHQQQHMHHQHHQNHHQQLQQQQLPHLHTLQLHGPPSP 435
>gb|AAK77286.1| GH06265p [Drosophila melanogaster]
Length = 1478
Score = 37.7 bits (86), Expect = 0.084
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 4/47 (8%)
Frame = +1
Query: 388 QNHRQSHQPHQETQHI----HCTYQQQVSQSAYPWSHTVQESSYPHP 516
QNH+Q H H + QH+ H + QQ+ Q P HT+Q P P
Sbjct: 24 QNHQQHHAGHHQQQHMHHQHHQNHHQQLQQQQLPHLHTLQLHGPPSP 70
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,151,172
Number of Sequences: 1393205
Number of extensions: 11197107
Number of successful extensions: 46474
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 37556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44911
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
