Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019182A_C01 KMC019182A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181390.1| putative elongation factor; protein id: At2g385... 117 8e-26
gb|AAL67018.1| putative elongation factor [Arabidopsis thaliana] 117 8e-26
gb|AAO60027.1| putative transcription elongation factor [Oryza s... 108 4e-23
dbj|BAC20918.1| putative transcription elongation factor [Oryza ... 102 3e-21
gb|EAA20599.1| transcription elongation factor TFIIS.h, putative... 49 4e-05
>ref|NP_181390.1| putative elongation factor; protein id: At2g38560.1 [Arabidopsis
thaliana] gi|25408599|pir||E84806 probable elongation
factor [imported] - Arabidopsis thaliana
gi|3786016|gb|AAC67362.1| putative elongation factor
[Arabidopsis thaliana] gi|23297820|gb|AAN13033.1|
putative elongation factor [Arabidopsis thaliana]
gi|26450199|dbj|BAC42218.1| putative elongation factor
[Arabidopsis thaliana]
Length = 378
Score = 117 bits (294), Expect = 8e-26
Identities = 76/195 (38%), Positives = 110/195 (55%), Gaps = 11/195 (5%)
Frame = +3
Query: 18 MYEAAKKAADASSS---SDSEHEETRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHP 188
++E AKKAADA++ + S E ++CIDAL+QLKKFPV Y LV TQVGK L+ L KHP
Sbjct: 8 LFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKLRSLAKHP 67
Query: 189 KPKIKAFAVELIEIWKGIIIKETSKNKNGGSDNKVESANGDRAKAGKMQKSPSVKVEK-- 362
IK+ A +L+EIWK ++I+ET+K K N + A ++ K VKV+K
Sbjct: 68 VEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAPVKVQKLQ 127
Query: 363 -GETVKVEKIDRNGTPRSSSENTNKARNV-DVKIEK----TERAASVKVEKIAKEEKPVS 524
G++ K K++R R V D+K+ R +VK EK++K+ + S
Sbjct: 128 RGDSAKSIKVERKEPDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEKVSKDNQ--S 185
Query: 525 VVKKTPSSSAAPPKL 569
+K ++ APPKL
Sbjct: 186 SMKAPAKAANAPPKL 200
>gb|AAL67018.1| putative elongation factor [Arabidopsis thaliana]
Length = 378
Score = 117 bits (294), Expect = 8e-26
Identities = 76/195 (38%), Positives = 110/195 (55%), Gaps = 11/195 (5%)
Frame = +3
Query: 18 MYEAAKKAADASSS---SDSEHEETRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHP 188
++E AKKAADA++ + S E ++CIDAL+QLKKFPV Y LV TQVGK L+ L KHP
Sbjct: 8 LFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKLRSLAKHP 67
Query: 189 KPKIKAFAVELIEIWKGIIIKETSKNKNGGSDNKVESANGDRAKAGKMQKSPSVKVEK-- 362
IK+ A +L+EIWK ++I+ET+K K N + A ++ K VKV+K
Sbjct: 68 VEDIKSVATDLLEIWKKVVIEETAKAKKTEGTNGCKEAKVNKMDVEKPSNPAPVKVQKLQ 127
Query: 363 -GETVKVEKIDRNGTPRSSSENTNKARNV-DVKIEK----TERAASVKVEKIAKEEKPVS 524
G++ K K++R R V D+K+ R +VK EK++K+ + S
Sbjct: 128 RGDSAKSIKVERKEPDNKVVTGVKIERKVPDIKVTNGTKIDYRGQAVKDEKVSKDNQ--S 185
Query: 525 VVKKTPSSSAAPPKL 569
+K ++ APPKL
Sbjct: 186 SMKAPAKAANAPPKL 200
>gb|AAO60027.1| putative transcription elongation factor [Oryza sativa (japonica
cultivar-group)]
Length = 367
Score = 108 bits (271), Expect = 4e-23
Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 6/189 (3%)
Frame = +3
Query: 21 YEAAKKAADASSSSDSEHEETRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPKPKI 200
+EAAKKAADA++ +D E RC+DA+ +L+ V +LV+TQVGK L+ LTKHP I
Sbjct: 9 FEAAKKAADAAAGADDSPEADRCLDAMRRLRGLRVTTDVLVSTQVGKRLRYLTKHPHSDI 68
Query: 201 KAFAVELIEIWKGIIIKETSKNKNGGSDNKVESANGDRAKAGKMQKSPSVKVEKGETVKV 380
++ A +L+ WK ++I+E KN G+ V S N + + EK + +KV
Sbjct: 69 QSMATDLLGYWKKVVIEEGKKN---GTTENVGSTNS------------AARAEKAQPMKV 113
Query: 381 EKIDRNGT--PRSSSENTNKARNVDVKIEK----TERAASVKVEKIAKEEKPVSVVKKTP 542
+K +G+ P N + +K+EK + VKVE+ KE KK
Sbjct: 114 DKSSASGSVKPEKREVNVRGQKPESIKVEKITNNDSKNQQVKVERAPKEATRTPDTKKPS 173
Query: 543 SSSAAPPKL 569
S PPKL
Sbjct: 174 SVPNGPPKL 182
>dbj|BAC20918.1| putative transcription elongation factor [Oryza sativa (japonica
cultivar-group)]
Length = 373
Score = 102 bits (255), Expect = 3e-21
Identities = 70/198 (35%), Positives = 99/198 (49%), Gaps = 15/198 (7%)
Frame = +3
Query: 21 YEAAKKAADA--------SSSSDSEHEETRCIDALEQLKKFPVNYKILVNTQVGKHLKVL 176
+EAA+KAADA + E RC+DAL +L+ V LV+TQ+G+ ++ L
Sbjct: 9 FEAARKAADAVGEAAAAAGAGEGESPEAARCVDALRRLRGARVTTAALVSTQIGRRIRYL 68
Query: 177 TKHPKPKIKAFAVELIEIWKGIIIKETSKN---KNGGSDNKVESANGDRAKAGKMQKSPS 347
TKHP IKA A +L+ WK ++I+E KN +NG S + V
Sbjct: 69 TKHPHSSIKATASDLLGHWKKVVIEEDKKNGALQNGKSSSTV------------------ 110
Query: 348 VKVEKGETVKVEKIDRNGTPRSSSENTNKARNVDVKIEKTE----RAASVKVEKIAKEEK 515
VKVEK E +KVEK T +++ +T + K+EK R S+KVEK+ K
Sbjct: 111 VKVEKVEPMKVEKASPRATVNNNNMDTRVVNHKGGKVEKFSNAELRTQSIKVEKVQKVVH 170
Query: 516 PVSVVKKTPSSSAAPPKL 569
VS V+K PP+L
Sbjct: 171 KVSSVEKPSPVQGGPPRL 188
>gb|EAA20599.1| transcription elongation factor TFIIS.h, putative [Plasmodium
yoelii yoelii]
Length = 366
Score = 48.9 bits (115), Expect = 4e-05
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Frame = +3
Query: 108 LKKFPVNYKILVNTQVGKHLKVLTKHPKPKIKAFAVELIEIWKGIIIKETSKNKNGGSDN 287
LK +N IL T++G + TK IK + EL++ WK I IKE + N+N +
Sbjct: 49 LKDVEINKDILKQTKIGVTVNKFTKINNESIKNISKELVDKWKNIAIKEKNSNRNSENIK 108
Query: 288 KVESANGDRAKAGKMQKSPSVKVE--------KGETVKVEKIDRNG--TPRSSSENTNKA 437
K + + + + +K P +K + T E + NG +S + N+N+
Sbjct: 109 KRKHSETENSNNNVNEKEPELKKKSTSCSLNNNNSTHINEDKENNGKNNTKSYAYNSNEN 168
Query: 438 RNVD-VKIEKTER 473
R ++ V IE+ ++
Sbjct: 169 RKINIVDIEEIQK 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,815,149
Number of Sequences: 1393205
Number of extensions: 10060101
Number of successful extensions: 39064
Number of sequences better than 10.0: 375
Number of HSP's better than 10.0 without gapping: 36687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38872
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
