Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019167A_C01 KMC019167A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173819.1| unknown protein; protein id: At1g24090.1 [Arabi... 64 6e-16
gb|AAF87147.1|AC002423_12 T23E23.24 [Arabidopsis thaliana] 64 6e-16
ref|NP_186790.1| putative RNase H; protein id: At3g01410.1 [Arab... 62 4e-15
gb|AAO64815.1| At5g51080 [Arabidopsis thaliana] 49 1e-10
ref|NP_199921.1| putative protein; protein id: At5g51080.1 [Arab... 49 1e-10
>ref|NP_173819.1| unknown protein; protein id: At1g24090.1 [Arabidopsis thaliana]
Length = 535
Score = 63.9 bits (154), Expect(2) = 6e-16
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +3
Query: 180 VSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGRLVACPYQEP 329
VSVYKGYSLP+ TEEYL S GLK YS+ A+D+++ +FG L C +QEP
Sbjct: 115 VSVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQEP 164
Score = 41.2 bits (95), Expect(2) = 6e-16
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +1
Query: 61 AMAEEKDAFFVVKKGDVVGVYKSFS 135
A+ +EKDAFFVV+KGDV+G+YK S
Sbjct: 76 AVDKEKDAFFVVRKGDVIGIYKDLS 100
>gb|AAF87147.1|AC002423_12 T23E23.24 [Arabidopsis thaliana]
Length = 360
Score = 63.9 bits (154), Expect(2) = 6e-16
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = +3
Query: 180 VSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGRLVACPYQEP 329
VSVYKGYSLP+ TEEYL S GLK YS+ A+D+++ +FG L C +QEP
Sbjct: 115 VSVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQEP 164
Score = 41.2 bits (95), Expect(2) = 6e-16
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +1
Query: 61 AMAEEKDAFFVVKKGDVVGVYKSFS 135
A+ +EKDAFFVV+KGDV+G+YK S
Sbjct: 76 AVDKEKDAFFVVRKGDVIGIYKDLS 100
>ref|NP_186790.1| putative RNase H; protein id: At3g01410.1 [Arabidopsis thaliana]
gi|6692261|gb|AAF24611.1|AC010870_4 putative RNase H
[Arabidopsis thaliana]
Length = 290
Score = 61.6 bits (148), Expect(2) = 4e-15
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = +3
Query: 180 VSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGRLVACPYQEPHAYVGTASVV 359
+SVYKGY P+ E+ L S G+K A +S+ A+ V++ FG+L+ CP Q+P + G +
Sbjct: 39 MSVYKGYGWPKGAEDLLSSFGIKNALFSVNASHVKDDAFGKLIPCPVQQPSSSQGESLNK 98
Query: 360 NSSSKSLQ 383
+S SK LQ
Sbjct: 99 SSPSKRLQ 106
Score = 40.8 bits (94), Expect(2) = 4e-15
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +1
Query: 64 MAEEKDAFFVVKKGDVVGVYKSFS 135
M +EKDAF++V+KGD++GVY+S S
Sbjct: 1 MEDEKDAFYIVRKGDIIGVYRSLS 24
>gb|AAO64815.1| At5g51080 [Arabidopsis thaliana]
Length = 322
Score = 48.9 bits (115), Expect(2) = 1e-10
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +3
Query: 180 VSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGRLVACPYQE 326
VSVYKGYSL + TEE L + GLK Y A D++E +FG L C +Q+
Sbjct: 112 VSVYKGYSLLKDTEECLSTVGLKKPLYVFRALDLKEDMFGALTPCLFQD 160
Score = 38.5 bits (88), Expect(2) = 1e-10
Identities = 15/19 (78%), Positives = 19/19 (99%)
Frame = +1
Query: 70 EEKDAFFVVKKGDVVGVYK 126
+EKDAFFVV+KGD+VG+YK
Sbjct: 76 KEKDAFFVVRKGDIVGIYK 94
>ref|NP_199921.1| putative protein; protein id: At5g51080.1 [Arabidopsis thaliana]
gi|8843844|dbj|BAA97370.1| contains similarity to RNase
H~gene_id:MWD22.2 [Arabidopsis thaliana]
Length = 316
Score = 48.9 bits (115), Expect(2) = 1e-10
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +3
Query: 180 VSVYKGYSLPQKTEEYLVSHGLKGARYSIGAADVQEGLFGRLVACPYQE 326
VSVYKGYSL + TEE L + GLK Y A D++E +FG L C +Q+
Sbjct: 112 VSVYKGYSLLKDTEECLSTVGLKKPLYVFRALDLKEDMFGALTPCLFQD 160
Score = 38.5 bits (88), Expect(2) = 1e-10
Identities = 15/19 (78%), Positives = 19/19 (99%)
Frame = +1
Query: 70 EEKDAFFVVKKGDVVGVYK 126
+EKDAFFVV+KGD+VG+YK
Sbjct: 76 KEKDAFFVVRKGDIVGIYK 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,315,622
Number of Sequences: 1393205
Number of extensions: 9118799
Number of successful extensions: 24975
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24812
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
