Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019152A_C01 KMC019152A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB91860.1| P0702H08.17 [Oryza sativa (japonica cultivar-gro... 40 0.020
dbj|BAB90161.1| P0408G07.7 [Oryza sativa (japonica cultivar-group)] 37 0.17
dbj|BAA95894.1| Similar to Arabidopsis thaliana chromosome2 BAC ... 36 0.37
dbj|BAC40899.1| unnamed protein product [Mus musculus] 35 0.63
sp|P21981|TGM2_MOUSE Protein-glutamine gamma-glutamyltransferase... 35 0.63
>dbj|BAB91860.1| P0702H08.17 [Oryza sativa (japonica cultivar-group)]
Length = 530
Score = 40.0 bits (92), Expect = 0.020
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -1
Query: 258 LLFSCPVSLDIWRHCYRWMGVCTTLPRNPRQHLL*F---QFGGNKKHQRGADAIWLAVIW 88
LL +CP S +W R +G LP N L + K+H+RG D I V W
Sbjct: 302 LLVACPESRQLWWVALRAIGHSECLPINEHSFLSWLCDCRKRMVKEHRRGFDTIATLVAW 361
Query: 87 TLWLIRNEIIF 55
T+W RN +F
Sbjct: 362 TIWKERNNRVF 372
>dbj|BAB90161.1| P0408G07.7 [Oryza sativa (japonica cultivar-group)]
Length = 661
Score = 37.0 bits (84), Expect = 0.17
Identities = 22/71 (30%), Positives = 32/71 (44%), Gaps = 3/71 (4%)
Frame = -1
Query: 258 LLFSCPVSLDIWRHCYRWMGVCTTLPRNPRQHLL*F---QFGGNKKHQRGADAIWLAVIW 88
LL +C S +W R +G+ LP N LL + K +RG D + + W
Sbjct: 545 LLVACLESRQLWWFALRAIGLSDILPFNEPSFLLWLCDKRMKVAKAQRRGFDTVAALIAW 604
Query: 87 TLWLIRNEIIF 55
T+W RN +F
Sbjct: 605 TIWKERNNRVF 615
>dbj|BAA95894.1| Similar to Arabidopsis thaliana chromosome2 BAC F13B15; putative
non-LTR retroelement reverse transcriptase. (AC006300)
[Oryza sativa (japonica cultivar-group)]
Length = 1136
Score = 35.8 bits (81), Expect = 0.37
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Frame = -1
Query: 258 LLFSCPVSLDIW---RHCYRWMGVCTTLPRNPRQHLL*FQFGGNKKHQRGADAI------ 106
L+F C +S W R + W G+ P++ R LL NK + D+I
Sbjct: 1018 LMFQCALSQFTWCCFRDAFGWDGI----PKS-RAELL------NKLSGQSGDSIPVLLSL 1066
Query: 105 WLAVIWTLWLIRNEIIFRNGML 40
+ A W++WL+RN+ +F N M+
Sbjct: 1067 FAAAAWSIWLLRNDWVFNNKMI 1088
>dbj|BAC40899.1| unnamed protein product [Mus musculus]
Length = 686
Score = 35.0 bits (79), Expect = 0.63
Identities = 22/84 (26%), Positives = 37/84 (43%), Gaps = 2/84 (2%)
Frame = -2
Query: 263 EHCCSRVRF--LWIFGAIAIGGWVSVQHCPGIPDNIYCNFNLVEIKNIKEVLMQSG*QLF 90
EH C +V++ W+F A+A +V C GIP + N+N +N +L++ F
Sbjct: 266 EHGCQQVKYGQCWVFAAVAC----TVLRCLGIPTRVVTNYNSAHDQN-SNLLIEYFRNEF 320
Query: 89 GRCG*FGMRLFSGMECWIYQQLWR 18
G + CW+ + R
Sbjct: 321 GELESNKSEMIWNFHCWVESWMTR 344
>sp|P21981|TGM2_MOUSE Protein-glutamine gamma-glutamyltransferase (Tissue
transglutaminase) (TGase C) (TGC) (TG(C))
(Tranglutaminase 2) gi|5006437|gb|AAD37501.1|AF114266_1
Gh/tissue transglutaminase [Mus musculus]
Length = 686
Score = 35.0 bits (79), Expect = 0.63
Identities = 22/84 (26%), Positives = 37/84 (43%), Gaps = 2/84 (2%)
Frame = -2
Query: 263 EHCCSRVRF--LWIFGAIAIGGWVSVQHCPGIPDNIYCNFNLVEIKNIKEVLMQSG*QLF 90
EH C +V++ W+F A+A +V C GIP + N+N +N +L++ F
Sbjct: 266 EHGCQQVKYGQCWVFAAVAC----TVLRCLGIPTRVVTNYNSAHDQN-SNLLIEYFRNEF 320
Query: 89 GRCG*FGMRLFSGMECWIYQQLWR 18
G + CW+ + R
Sbjct: 321 GELESNKSEMIWNFHCWVESWMTR 344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,975,619
Number of Sequences: 1393205
Number of extensions: 12543810
Number of successful extensions: 34971
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 33710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34953
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
