Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019138A_C01 KMC019138A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P28551|TBB3_SOYBN TUBULIN BETA CHAIN gi|312989|emb|CAA42777.1... 368 e-101
sp|P46265|TBB3_ORYSA TUBULIN BETA CHAIN gi|493710|dbj|BAA06382.1... 367 e-101
pir||JC2511 beta-tubulin R2242 - rice 367 e-101
sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin) gi|62... 365 e-100
sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain (Beta-1 tubulin) gi|44... 365 e-100
>sp|P28551|TBB3_SOYBN TUBULIN BETA CHAIN gi|312989|emb|CAA42777.1| beta-tubulin [Glycine
max]
Length = 408
Score = 368 bits (945), Expect = e-101
Identities = 175/179 (97%), Positives = 177/179 (98%)
Frame = +3
Query: 54 MREILHIXGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYV 233
MREILHI GGQCGNQIGAKFWEVICDEHGIDHTGKY+GDSELQLERINVYYNEASGGRYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSELQLERINVYYNEASGGRYV 60
Query: 234 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 413
PRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 414 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDTV 590
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP VSDTV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
>sp|P46265|TBB3_ORYSA TUBULIN BETA CHAIN gi|493710|dbj|BAA06382.1| beta-tubulin [Oryza
sativa (japonica cultivar-group)]
Length = 447
Score = 367 bits (941), Expect = e-101
Identities = 174/179 (97%), Positives = 177/179 (98%)
Frame = +3
Query: 54 MREILHIXGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYV 233
MREILHI GGQCGNQIGAKFWEVICDEHGIDHTGKY+GDS+LQLERINVYYNEASGGR+V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRFV 60
Query: 234 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 413
PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 414 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDTV 590
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP VSDTV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
>pir||JC2511 beta-tubulin R2242 - rice
Length = 444
Score = 367 bits (941), Expect = e-101
Identities = 174/179 (97%), Positives = 177/179 (98%)
Frame = +3
Query: 54 MREILHIXGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYV 233
MREILHI GGQCGNQIGAKFWEVICDEHGIDHTGKY+GDS+LQLERINVYYNEASGGR+V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRFV 60
Query: 234 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 413
PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 414 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDTV 590
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP VSDTV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
>sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin) gi|629840|pir||S43328 tubulin
beta-7 chain - maize gi|416149|gb|AAA19708.1| beta-7
tubulin
Length = 445
Score = 365 bits (938), Expect = e-100
Identities = 174/179 (97%), Positives = 176/179 (98%)
Frame = +3
Query: 54 MREILHIXGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYV 233
MREILHI GGQCGNQIGAKFWEVICDEHGIDHTGKY GDS+LQLERINVYYNEASGGR+V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQLERINVYYNEASGGRFV 60
Query: 234 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 413
PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 414 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDTV 590
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP VSDTV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
>sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain (Beta-1 tubulin) gi|4415990|gb|AAD20178.1|
beta-tubulin 1 [Eleusine indica]
Length = 445
Score = 365 bits (938), Expect = e-100
Identities = 174/179 (97%), Positives = 176/179 (98%)
Frame = +3
Query: 54 MREILHIXGGQCGNQIGAKFWEVICDEHGIDHTGKYNGDSELQLERINVYYNEASGGRYV 233
MREILHI GGQCGNQIGAKFWEVICDEHGIDHTGKY GDS+LQLERINVYYNEASGGR+V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQLERINVYYNEASGGRFV 60
Query: 234 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 413
PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 414 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPXVSDTV 590
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSP VSDTV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,864,136
Number of Sequences: 1393205
Number of extensions: 14102855
Number of successful extensions: 84781
Number of sequences better than 10.0: 2600
Number of HSP's better than 10.0 without gapping: 71062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81450
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
