Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019124A_C01 KMC019124A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09335 MADS-box protein NMH 7 - alfalfa gi|2827300|gb|AAC15... 187 7e-47
gb|AAB48660.1| MADS-box protein [Medicago sativa] 185 4e-46
sp|P23706|DEFA_ANTMA Floral homeotic protein deficiens gi|100479... 114 1e-24
emb|CAA65288.1| MADS-box protein [Nicotiana tabacum] 111 7e-24
gb|AAC42584.1| APETALA3 homolog SvAP3 [Syringa vulgaris] 110 1e-23
>pir||T09335 MADS-box protein NMH 7 - alfalfa gi|2827300|gb|AAC15419.1| MADS-box
protein NMH 7 [Medicago sativa]
Length = 229
Score = 187 bits (476), Expect = 7e-47
Identities = 90/103 (87%), Positives = 95/103 (91%)
Frame = -1
Query: 610 EMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPYELMDNGGEY 431
EMD AAKA+RERKYKVITNQIDTQRKK NNEREVHNRLLRDLDARAE+P +E+MDNGGEY
Sbjct: 127 EMDKAAKAIRERKYKVITNQIDTQRKKSNNEREVHNRLLRDLDARAEDPRFEMMDNGGEY 186
Query: 430 ESVIGFSNLGPRMFALSLQPSHPNAHNSGGGAGSDLTTYPLLF 302
ESVIGFSNLGPRMFALSLQP+HPN HN G A SDLTTYPLLF
Sbjct: 187 ESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF 229
>gb|AAB48660.1| MADS-box protein [Medicago sativa]
Length = 247
Score = 185 bits (470), Expect = 4e-46
Identities = 89/103 (86%), Positives = 94/103 (90%)
Frame = -1
Query: 610 EMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPYELMDNGGEY 431
EMD A KA+RERKYKVITNQIDTQRKKFNNEREV NRLLRDLDARAE+P +E+MDNGGEY
Sbjct: 127 EMDKALKAIRERKYKVITNQIDTQRKKFNNEREVDNRLLRDLDARAEDPRFEMMDNGGEY 186
Query: 430 ESVIGFSNLGPRMFALSLQPSHPNAHNSGGGAGSDLTTYPLLF 302
ESVIGFSNLGPRMFALSLQP+HPN HN G A SDLTTYPLLF
Sbjct: 187 ESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF 229
>sp|P23706|DEFA_ANTMA Floral homeotic protein deficiens gi|100479|pir||S12378 MADS box
protein defA-1 - garden snapdragon
gi|16018|emb|CAA44629.1| DEF A protein [Antirrhinum
majus] gi|16020|emb|CAA36268.1| deficiens [Antirrhinum
majus]
Length = 227
Score = 114 bits (284), Expect = 1e-24
Identities = 56/103 (54%), Positives = 74/103 (71%)
Frame = -1
Query: 613 QEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPYELMDNGGE 434
++MDN+ K +RERKYKVI+NQIDT +KK N E+H L+ + DAR E+P + L+DN G+
Sbjct: 126 EDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEGD 185
Query: 433 YESVIGFSNLGPRMFALSLQPSHPNAHNSGGGAGSDLTTYPLL 305
Y SV+GF N GPR+ AL L +H +SGG GSDLTT+ LL
Sbjct: 186 YNSVLGFPNGGPRIIALRLPTNHHPTLHSGG--GSDLTTFALL 226
>emb|CAA65288.1| MADS-box protein [Nicotiana tabacum]
Length = 227
Score = 111 bits (278), Expect = 7e-24
Identities = 54/102 (52%), Positives = 71/102 (68%)
Frame = -1
Query: 613 QEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPYELMDNGGE 434
+ +DN+ K +RERKYKVI NQIDT +KK N E+H LL + DAR E+ PY L++ G+
Sbjct: 126 ENVDNSLKLIRERKYKVIGNQIDTYKKKVRNVEEIHRNLLLEFDARQED-PYGLVEQEGD 184
Query: 433 YESVIGFSNLGPRMFALSLQPSHPNAHNSGGGAGSDLTTYPL 308
Y SV+GF N GPR+ AL LQP+H H+ G GSD+TT+ L
Sbjct: 185 YNSVLGFPNGGPRILALRLQPNHQPNHHLHSGGGSDITTFAL 226
>gb|AAC42584.1| APETALA3 homolog SvAP3 [Syringa vulgaris]
Length = 202
Score = 110 bits (276), Expect = 1e-23
Identities = 54/104 (51%), Positives = 74/104 (70%), Gaps = 1/104 (0%)
Frame = -1
Query: 613 QEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAENPPYELMDNGGE 434
+++D++ + +RERKYKVI NQI+T +KK N E+H +L + DAR E+P Y L+DN G+
Sbjct: 101 EDVDDSLRKIRERKYKVIGNQIETSKKKLRNVEEIHRNILLEFDARQEDPQYGLVDNEGD 160
Query: 433 YESVIGFSNLGPRMFALSLQPS-HPNAHNSGGGAGSDLTTYPLL 305
Y SV+GF N GPR+ AL L + HPN H+ G GSDLTT+ LL
Sbjct: 161 YNSVLGFPNGGPRIIALRLPSNHHPNLHS---GGGSDLTTFALL 201
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,302,794
Number of Sequences: 1393205
Number of extensions: 10684128
Number of successful extensions: 26659
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 25693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26586
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
