Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019120A_C01 KMC019120A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65285.1| putative ATPase [Arabidopsis thaliana] 238 4e-62
ref|NP_180328.1| putative ATPase; protein id: At2g27600.1, suppo... 238 4e-62
gb|AAN03820.1|AF499028_1 AAA-ATPase-like protein [Oryza sativa (... 218 3e-56
dbj|BAB16447.1| putative AAA-type ATPase [Oryza sativa (japonica... 154 1e-36
ref|NP_172304.1| hypothetical protein; protein id: At1g08270.1 [... 138 4e-32
>gb|AAM65285.1| putative ATPase [Arabidopsis thaliana]
Length = 434
Score = 238 bits (607), Expect = 4e-62
Identities = 117/129 (90%), Positives = 122/129 (93%), Gaps = 2/129 (1%)
Frame = +2
Query: 203 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNAXEYFKTHLKYEKNPKIKEAITQKFT 382
MYSNFKEQAIEYVKQAV EDNAGNY KAFPLYMNA EYFKTHLKYEKNPKI+EAITQKFT
Sbjct: 1 MYSNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT 60
Query: 383 EYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGG--DGEDPEQAKLRAGLNS 556
EYLRRAEEIRAVLD+GG GP SNGDAAVATRPKTKPKDGEGG DGEDPEQ+KLRAGLNS
Sbjct: 61 EYLRRAEEIRAVLDEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLNS 120
Query: 557 AIIREKPNV 583
AI+REKPN+
Sbjct: 121 AIVREKPNI 129
>ref|NP_180328.1| putative ATPase; protein id: At2g27600.1, supported by cDNA: 3818.,
supported by cDNA: gi_13605796, supported by cDNA:
gi_20147132 [Arabidopsis thaliana]
gi|25407909|pir||F84674 probable AAA-type ATPase
[imported] - Arabidopsis thaliana
gi|3860272|gb|AAC73040.1| putative ATPase [Arabidopsis
thaliana] gi|13605797|gb|AAK32884.1|AF367297_1
F10A12.27/F10A12.27 [Arabidopsis thaliana]
gi|20147133|gb|AAM10283.1| F10A12.27/F10A12.27
[Arabidopsis thaliana] gi|20197659|gb|AAM15184.1|
putative ATPase [Arabidopsis thaliana]
Length = 435
Score = 238 bits (607), Expect = 4e-62
Identities = 117/129 (90%), Positives = 122/129 (93%), Gaps = 2/129 (1%)
Frame = +2
Query: 203 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNAXEYFKTHLKYEKNPKIKEAITQKFT 382
MYSNFKEQAIEYVKQAV EDNAGNY KAFPLYMNA EYFKTHLKYEKNPKI+EAITQKFT
Sbjct: 1 MYSNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT 60
Query: 383 EYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGG--DGEDPEQAKLRAGLNS 556
EYLRRAEEIRAVLD+GG GP SNGDAAVATRPKTKPKDGEGG DGEDPEQ+KLRAGLNS
Sbjct: 61 EYLRRAEEIRAVLDEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLNS 120
Query: 557 AIIREKPNV 583
AI+REKPN+
Sbjct: 121 AIVREKPNI 129
>gb|AAN03820.1|AF499028_1 AAA-ATPase-like protein [Oryza sativa (japonica cultivar-group)]
Length = 408
Score = 218 bits (556), Expect = 3e-56
Identities = 112/128 (87%), Positives = 117/128 (90%), Gaps = 1/128 (0%)
Frame = +2
Query: 203 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNAXEYFKTHLKYEKNPKIKEAITQKFT 382
MYSNFKEQAIEYVKQAVQEDNAGNY KAFPLYMNA EYFKTHLKYEKNPKIKEAIT KFT
Sbjct: 1 MYSNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFT 60
Query: 383 EYLRRAEEIRAVLDDGGPGPASN-GDAAVATRPKTKPKDGEGGDGEDPEQAKLRAGLNSA 559
EYLRRAEEIRAVLD+GG G +N GDAAVATRPKTK KDGEGG G+D EQ+KLRAGLNSA
Sbjct: 61 EYLRRAEEIRAVLDEGGGGGGANGGDAAVATRPKTKGKDGEGG-GDDSEQSKLRAGLNSA 119
Query: 560 IIREKPNV 583
II EKPN+
Sbjct: 120 IITEKPNI 127
>dbj|BAB16447.1| putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)]
Length = 411
Score = 154 bits (388), Expect = 1e-36
Identities = 84/127 (66%), Positives = 88/127 (69%)
Frame = +2
Query: 203 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNAXEYFKTHLKYEKNPKIKEAITQKFT 382
MYSNFKEQAIEYVKQAVQEDN GNY KAFPLYMNA EYFKTHLKYEK+PKIK+AI KFT
Sbjct: 1 MYSNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYEKDPKIKDAIAAKFT 60
Query: 383 EYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGGDGEDPEQAKLRAGLNSAI 562
EYLRRAEEIRAVLD G GG G D EQAK R L SAI
Sbjct: 61 EYLRRAEEIRAVLDG---------------------HIGGGGGGGDSEQAKPRGMLRSAI 99
Query: 563 IREKPNV 583
+ KP+V
Sbjct: 100 VAAKPSV 106
>ref|NP_172304.1| hypothetical protein; protein id: At1g08270.1 [Arabidopsis
thaliana] gi|25407034|pir||F86216 protein T23G18.12
[imported] - Arabidopsis thaliana
gi|6579206|gb|AAF18249.1|AC011438_11 T23G18.12
[Arabidopsis thaliana] gi|28973775|gb|AAO64203.1|
unknown protein [Arabidopsis thaliana]
Length = 126
Score = 138 bits (348), Expect = 4e-32
Identities = 73/95 (76%), Positives = 81/95 (84%)
Frame = +2
Query: 299 MNAXEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRP 478
MNA EYFK +LKYEKNP+I++AIT KF EYLRRAEEIRAVL + G G SNGDAAVAT+P
Sbjct: 1 MNALEYFKIYLKYEKNPRIRDAITDKFYEYLRRAEEIRAVLVEVGSGKGSNGDAAVATKP 60
Query: 479 KTKPKDGEGGDGEDPEQAKLRAGLNSAIIREKPNV 583
KTKPKD GGDG E++KLRAGLNSAIIREKPNV
Sbjct: 61 KTKPKD--GGDG---EESKLRAGLNSAIIREKPNV 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,378,495
Number of Sequences: 1393205
Number of extensions: 13593478
Number of successful extensions: 69922
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 59435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68872
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
